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CN-SCN_Plasmids_251x

CN-SCN_Proteobacteria_61_324
In projects: CN-SCN  |  phage-plasmid-virus-protein-families

Consensus taxonomy: Proteobacteria  →  Bacteria

Taxonomy override: Mobile_element

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 323.50 Longest contig: 143.91 Kbp Bin length: 1.61 Mbp GC content: 61.16 %
Contigs count: 70 Features count: 1834 rRNAs count: 0 tRNAs count: 31

Genome completeness

RP 0 / 55 BSCG 0 / 51 ASCG 0 / 38
Displaying items 1-50 of 70 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_236 PLASMID1_2
Phylum: Proteobacteria (69.06%)
181 131281 bp 56.50 686.46 91.03
cn_combo_scaffold_160 PLASMID1_1
Order: Burkholderiales (65.07%)
146 143908 bp 65.96 149.36 86.86
cn_combo_scaffold_413 PLASMID1_3
Phylum: Proteobacteria (58.33%)
144 124752 bp 59.79 37.96 89.71
cn_combo_scaffold_603 PLASMID1_4
Species: Rhodocyclaceae bacterium PG1-Ca6 (51.67%)
120 125902 bp 56.02 1041.81 92.05
cn_combo_scaffold_739 PLASMID1_5
Class: Betaproteobacteria (50%)
78 62268 bp 59.30 116.31 85.64
cn_combo_scaffold_1018 PLASMID1_6
Class: Gammaproteobacteria (51.85%)
54 47352 bp 64.15 20.02 92.61
cn_combo_scaffold_3495 PLASMID1_31
Phylum: Proteobacteria (50%)
54 40297 bp 63.61 2018.82 85.86
cn_combo_scaffold_1042 PLASMID1_7
Order: Burkholderiales (69.39%)
49 46548 bp 61.90 18.84 89.96
cn_combo_scaffold_6610 PLASMID1_45
Domain: Bacteria (81.25%)
48 40117 bp 61.80 1074.48 88.42
cn_combo_scaffold_1456 PLASMID1_10
Order: Hydrogenophilales (72.73%)
44 35380 bp 59.71 23.56 94.17
cn_combo_scaffold_1371 PLASMID1_9
Phylum: Proteobacteria (83.33%)
42 45166 bp 64.26 93.28 91.18
cn_combo_scaffold_3137 PLASMID1_21
Class: Gammaproteobacteria (60%)
35 34964 bp 61.88 40.21 89.50
cn_combo_scaffold_1930 PLASMID1_13
Phylum: Proteobacteria (61.76%)
34 28246 bp 50.81 23.97 87.38
cn_combo_scaffold_4574 PLASMID1_34
Genus: Thauera (50%)
32 22864 bp 56.48 30.72 87.37
cn_combo_scaffold_1916 PLASMID1_12
Order: Sphingomonadales (96.67%)
30 28396 bp 64.36 30.50 87.96
cn_combo_scaffold_2285 PLASMID1_14
Class: Gammaproteobacteria (50%)
28 23874 bp 52.35 26.13 88.16
cn_combo_scaffold_2948 PLASMID1_20
Order: Burkholderiales (76.92%)
26 25949 bp 63.29 536.71 93.70
cn_combo_scaffold_4130 PLASMID1_33
Order: Burkholderiales (68%)
25 24179 bp 63.70 57.23 90.59
cn_combo_scaffold_5019 PLASMID1_36
Class: Alphaproteobacteria (76%)
25 21437 bp 62.53 189.99 87.76
cn_combo_scaffold_5714 PLASMID1_40
Class: Betaproteobacteria (56%)
25 19296 bp 65.26 209.54 83.01
cn_combo_scaffold_10680 PLASMID1_67
Phylum: Proteobacteria (58.33%)
24 13758 bp 61.39 988.86 92.24
cn_combo_scaffold_2311 PLASMID1_15
Genus: Sphingobium (69.57%)
23 23629 bp 64.69 36.73 92.19
cn_combo_scaffold_2450 PLASMID1_16
Order: Burkholderiales (82.61%)
23 22477 bp 64.01 19.58 89.30
cn_combo_scaffold_2974 PLASMID1_19
Order: Burkholderiales (81.82%)
22 19720 bp 62.45 540.45 94.12
cn_combo_scaffold_2573 PLASMID1_17
Order: Rhizobiales (71.43%)
21 21591 bp 60.12 15.67 90.86
cn_combo_scaffold_3803 PLASMID1_28
Order: Burkholderiales (66.67%)
21 15221 bp 65.63 17.67 82.21
cn_combo_scaffold_3123 PLASMID1_22
Class: Betaproteobacteria (70%)
20 24186 bp 61.46 337.21 94.58
cn_combo_scaffold_3959 PLASMID1_29
Genus: Bradyrhizobium (55%)
20 14747 bp 62.00 12.58 88.94
cn_combo_scaffold_4115 PLASMID1_32
Order: Burkholderiales (55.56%)
18 14230 bp 65.97 19.10 96.58
cn_combo_scaffold_3425 PLASMID1_25
Phylum: Proteobacteria (58.82%)
17 16815 bp 61.74 14.55 92.93
cn_combo_scaffold_3711 PLASMID1_27
Order: Burkholderiales (82.35%)
17 15550 bp 67.54 21.25 95.13
cn_combo_scaffold_4603 PLASMID1_35
Order: Sphingomonadales (82.35%)
17 12774 bp 65.01 21.60 80.30
cn_combo_scaffold_3182 PLASMID1_23
Species: Chelativorans sp. BNC1 (62.5%)
16 18652 bp 61.70 26.22 88.59
cn_combo_scaffold_3472 PLASMID1_26
Species: uncultured bacterium pAKD4 (86.67%)
15 16544 bp 63.14 12.51 94.13
cn_combo_scaffold_5149 PLASMID1_37
Phylum: Proteobacteria (71.43%)
14 11454 bp 53.05 23.76 83.34
cn_combo_scaffold_6084 PLASMID1_42
Class: Betaproteobacteria (57.14%)
14 9893 bp 57.85 1530.23 89.73
cn_combo_scaffold_7190 PLASMID1_51
Class: Gammaproteobacteria (64.29%)
14 11315 bp 65.67 358.78 81.50
cn_combo_scaffold_3310 PLASMID1_24
Order: Burkholderiales (53.85%)
13 18329 bp 58.16 366.05 94.34
cn_combo_scaffold_5622 PLASMID1_39
Order: Burkholderiales (76.92%)
13 10599 bp 69.12 20.62 92.58
cn_combo_scaffold_18721 PLASMID1_81
Class: Alphaproteobacteria (53.85%)
13 8549 bp 60.57 44.73 86.50
cn_combo_scaffold_7120 PLASMID1_47
Class: Alphaproteobacteria (66.67%)
12 8583 bp 63.63 19.57 83.71
cn_combo_scaffold_7223 PLASMID1_49
Class: Betaproteobacteria (50%)
12 8480 bp 69.19 24.65 92.41
cn_combo_scaffold_6712 PLASMID1_46
Order: Burkholderiales (54.55%)
11 9068 bp 68.37 18.35 92.59
cn_combo_scaffold_7300 PLASMID1_52
Genus: Paracoccus (72.73%)
11 8399 bp 56.46 90.18 80.05
cn_combo_scaffold_7623 PLASMID1_56
Species: uncultured bacterium pAKD4 (72.73%)
11 8095 bp 63.22 14.28 96.76
cn_combo_scaffold_8361 PLASMID1_59
Species: Ralstonia pickettii (100%)
11 7469 bp 66.85 95.31 77.00
cn_combo_scaffold_10164 PLASMID1_64
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (54.55%)
11 8525 bp 64.14 469.65 93.04
cn_combo_scaffold_7540 PLASMID1_54
Species: Bradyrhizobium elkanii (50%)
10 8169 bp 64.21 17.85 100.40
cn_combo_scaffold_7562 PLASMID1_55
Species: Alicycliphilus denitrificans (50%)
10 8152 bp 66.28 45.15 91.34
cn_combo_scaffold_8853 PLASMID1_61
Class: Betaproteobacteria (50%)
10 7099 bp 54.71 18.23 92.89
Displaying items 1-50 of 70 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.