Consensus taxonomy: Proteobacteria → Bacteria
Taxonomy override: Mobile_element
contig | # features | sequence size | GC content (%) | Cov | Coding Density (%) | |
---|---|---|---|---|---|---|
cn_combo_scaffold_667
PLASMID2_82
Genus:
Sphingobium (50%)
|
108 | 107804 bp | 66.03 | 43.07 | 89.54 |
first two genes belong to SPH17, rest is plasmid-like.
Rose Kantor
(3/17/14)
|
cn_combo_scaffold_595
PLASMID2_1
Class:
Betaproteobacteria (65.93%)
|
91 | 68423 bp | 57.10 | 851.64 | 87.23 | |
cn_combo_scaffold_433
PLASMID2_70
Domain:
Bacteria (78.75%)
|
80 | 84218 bp | 70.01 | 32.98 | 92.56 | |
cn_combo_scaffold_1388
PLASMID2_48c
Genus:
Devosia (50%)
|
78 | 78574 bp | 60.64 | 83.24 | 90.49 | |
cn_combo_scaffold_830
PLASMID2_61
Order:
Sphingomonadales (85.71%)
|
77 | 70276 bp | 63.99 | 49.06 | 92.06 | |
cn_combo_scaffold_949
PLASMID2_55
Order:
Burkholderiales (82.09%)
|
67 | 75023 bp | 64.33 | 87.98 | 87.35 | |
cn_combo_scaffold_878
PLASMID2_3
Phylum:
Proteobacteria (61.67%)
|
60 | 53922 bp | 64.19 | 22.94 | 87.35 | |
cn_combo_scaffold_1170
PLASMID2_4
Species:
Pseudomonas aeruginosa (54.72%)
|
53 | 51373 bp | 64.16 | 72.98 | 89.29 | |
cn_combo_scaffold_1332
PLASMID2_46b
Order:
Rhizobiales (77.78%)
|
45 | 38479 bp | 64.69 | 20.36 | 88.63 | |
cn_combo_scaffold_2235
PLASMID2_14
Order:
Burkholderiales (57.14%)
|
42 | 45227 bp | 64.56 | 111.71 | 91.76 | |
cn_combo_scaffold_1464
PLASMID2_60
Order:
Rhizobiales (89.19%)
|
37 | 35241 bp | 61.33 | 24.47 | 84.23 | |
cn_combo_scaffold_2206
PLASMID2_12
Class:
Betaproteobacteria (72.97%)
|
37 | 41885 bp | 56.33 | 759.57 | 91.44 | |
cn_combo_scaffold_1593
PLASMID2_63
Order:
Rhizobiales (55.56%)
|
36 | 32662 bp | 62.33 | 55.20 | 91.81 | |
cn_combo_scaffold_1907
PLASMID2_7
Phylum:
Proteobacteria (55.88%)
|
34 | 28476 bp | 63.57 | 23.67 | 84.92 | |
cn_combo_scaffold_3169
PLASMID2_19
Class:
Betaproteobacteria (61.76%)
|
34 | 27081 bp | 61.00 | 610.03 | 88.67 | |
cn_combo_scaffold_1835
PLASMID2_6
Phylum:
Proteobacteria (59.38%)
|
32 | 29503 bp | 53.25 | 23.64 | 75.32 | |
cn_combo_scaffold_1977
PLASMID2_8
Class:
Betaproteobacteria (70.97%)
|
31 | 27575 bp | 57.76 | 936.33 | 90.83 | |
cn_combo_scaffold_1987
PLASMID2_9
Order:
Pseudonocardiales (53.33%)
|
30 | 34653 bp | 72.61 | 616.74 | 86.19 | |
cn_combo_scaffold_2205
PLASMID2_11
Order:
Burkholderiales (58.62%)
|
29 | 24790 bp | 65.52 | 113.38 | 87.47 | |
cn_combo_scaffold_1765
PLASMID2_5
Class:
Alphaproteobacteria (60.71%)
|
28 | 30330 bp | 63.25 | 25.06 | 83.24 | |
cn_combo_scaffold_2040
PLASMID2_10
Phylum:
Proteobacteria (61.54%)
|
26 | 26863 bp | 63.72 | 11.51 | 96.15 | |
cn_combo_scaffold_5729
PLASMID2_29
Species:
Pseudomonas aeruginosa (66.67%)
|
24 | 20903 bp | 63.89 | 96.45 | 93.65 | |
cn_combo_scaffold_2140
PLASMID2_75
Class:
Betaproteobacteria (50%)
|
22 | 25622 bp | 69.95 | 130.54 | 92.70 | |
cn_combo_scaffold_3101 PLASMID2_18 | 21 | 18364 bp | 59.48 | 11.90 | 84.44 | |
cn_combo_scaffold_3999
PLASMID2_48e
Species:
Pseudonocardia dioxanivorans (70%)
|
20 | 14605 bp | 69.87 | 212.03 | 92.04 | |
cn_combo_scaffold_6891
PLASMID2_76
Order:
Burkholderiales (73.68%)
|
19 | 14686 bp | 64.16 | 32.46 | 71.31 | |
cn_combo_scaffold_2988
PLASMID2_47a
Class:
Alphaproteobacteria (78.95%)
|
19 | 18916 bp | 63.32 | 101.28 | 96.09 | |
cn_combo_scaffold_4351
PLASMID2_79
Species:
Paracoccus sp. 361 (57.89%)
|
19 | 17701 bp | 62.76 | 66.54 | 84.54 | |
cn_combo_scaffold_3005
PLASMID2_17
Domain:
Bacteria (73.68%)
|
19 | 18844 bp | 61.16 | 15.43 | 93.40 | |
cn_combo_scaffold_3410
PLASMID2_59
Species:
Sulfitobacter pseudonitzschiae (84.21%)
|
19 | 16912 bp | 62.22 | 98.51 | 89.71 | |
cn_combo_scaffold_2754
PLASMID2_15
Domain:
Bacteria (50%)
|
18 | 20331 bp | 63.07 | 38.75 | 82.69 | |
cn_combo_scaffold_2702
PLASMID2_48b
Order:
Flavobacteriales (52.94%)
|
17 | 20769 bp | 37.34 | 13.76 | 92.45 | |
cn_combo_scaffold_3642
PLASMID2_25
Species:
Pseudonocardia dioxanivorans (64.71%)
|
17 | 15805 bp | 68.50 | 309.81 | 83.86 | |
cn_combo_scaffold_3525 PLASMID2_21 | 16 | 16291 bp | 63.29 | 56.22 | 67.47 | |
cn_combo_scaffold_4485
PLASMID2_74
Order:
Rhizobiales (60%)
|
15 | 14337 bp | 62.70 | 10.46 | 77.92 | |
cn_combo_scaffold_6026
PLASMID2_47b
Class:
Betaproteobacteria (64.29%)
|
14 | 9962 bp | 53.27 | 95.60 | 73.12 | |
cn_combo_scaffold_4799
PLASMID2_45b
Species:
Pseudomonas aeruginosa (50%)
|
14 | 12279 bp | 62.82 | 15.07 | 73.74 | |
cn_combo_scaffold_3530
PLASMID2_24
Class:
Betaproteobacteria (85.71%)
|
14 | 16256 bp | 57.45 | 1397.10 | 92.70 | |
cn_combo_scaffold_5571
PLASMID2_28
Genus:
Sphingobium (85.71%)
|
14 | 10709 bp | 61.79 | 55.26 | 92.08 | |
cn_combo_scaffold_8134
PLASMID2_33
Order:
Rhizobiales (50%)
|
14 | 8273 bp | 64.16 | 105.26 | 83.22 | |
cn_combo_scaffold_3323
PLASMID2_53
Class:
Gammaproteobacteria (69.23%)
|
13 | 17255 bp | 62.15 | 28.09 | 88.51 | |
cn_combo_scaffold_10752
PLASMID2_52
Species:
RIFOXYA1_FULL_Xanthomonadales_69_10_curated (61.54%)
|
13 | 14158 bp | 68.25 | 110.61 | 94.91 | |
cn_combo_scaffold_3544
PLASMID2_22
Species:
Pseudonocardia dioxanivorans (92.31%)
|
13 | 16214 bp | 68.53 | 311.44 | 81.58 | |
cn_combo_scaffold_6738
PLASMID2_30
Class:
Betaproteobacteria (84.62%)
|
13 | 12055 bp | 58.73 | 1131.12 | 83.44 | |
cn_combo_scaffold_11510
PLASMID2_48d
Order:
Burkholderiales (58.33%)
|
12 | 7789 bp | 60.73 | 48.76 | 92.75 | |
cn_combo_scaffold_5440
PLASMID2_78
Class:
Alphaproteobacteria (50%)
|
12 | 10918 bp | 50.93 | 84.43 | 86.55 | |
cn_combo_scaffold_3504 PLASMID2_20 | 12 | 16352 bp | 58.94 | 26.46 | 87.40 | |
cn_combo_scaffold_5553
PLASMID2_27
Species:
Sphingomonas sp. LH128 (66.67%)
|
12 | 10749 bp | 66.59 | 154.35 | 91.49 | |
cn_combo_scaffold_10577
PLASMID2_40
Class:
Betaproteobacteria (75%)
|
12 | 5990 bp | 59.43 | 2021.67 | 87.30 | |
cn_combo_scaffold_25295
PLASMID2_72
Phylum:
Proteobacteria (54.55%)
|
11 | 6710 bp | 57.06 | 154.80 | 79.63 |