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CN-SCN_Plasmid_191x

CN-SCN_Proteobacteria_63_186
In projects: CN-SCN  |  phage-plasmid-virus-protein-families

Consensus taxonomy: Proteobacteria  →  Bacteria

Taxonomy override: Mobile_element

Displaying items 1-50 of 82 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_667 PLASMID2_82
Genus: Sphingobium (50%)
108 107804 bp 66.03 43.07 89.54
first two genes belong to SPH17, rest is plasmid-like. Rose Kantor (3/17/14)
cn_combo_scaffold_595 PLASMID2_1
Class: Betaproteobacteria (65.93%)
91 68423 bp 57.10 851.64 87.23
cn_combo_scaffold_433 PLASMID2_70
Domain: Bacteria (78.75%)
80 84218 bp 70.01 32.98 92.56
cn_combo_scaffold_1388 PLASMID2_48c
Genus: Devosia (50%)
78 78574 bp 60.64 83.24 90.49
cn_combo_scaffold_830 PLASMID2_61
Order: Sphingomonadales (85.71%)
77 70276 bp 63.99 49.06 92.06
cn_combo_scaffold_949 PLASMID2_55
Order: Burkholderiales (82.09%)
67 75023 bp 64.33 87.98 87.35
cn_combo_scaffold_878 PLASMID2_3
Phylum: Proteobacteria (61.67%)
60 53922 bp 64.19 22.94 87.35
cn_combo_scaffold_1170 PLASMID2_4
Species: Pseudomonas aeruginosa (54.72%)
53 51373 bp 64.16 72.98 89.29
cn_combo_scaffold_1332 PLASMID2_46b
Order: Rhizobiales (77.78%)
45 38479 bp 64.69 20.36 88.63
cn_combo_scaffold_2235 PLASMID2_14
Order: Burkholderiales (57.14%)
42 45227 bp 64.56 111.71 91.76
cn_combo_scaffold_1464 PLASMID2_60
Order: Rhizobiales (89.19%)
37 35241 bp 61.33 24.47 84.23
cn_combo_scaffold_2206 PLASMID2_12
Class: Betaproteobacteria (72.97%)
37 41885 bp 56.33 759.57 91.44
cn_combo_scaffold_1593 PLASMID2_63
Order: Rhizobiales (55.56%)
36 32662 bp 62.33 55.20 91.81
cn_combo_scaffold_1907 PLASMID2_7
Phylum: Proteobacteria (55.88%)
34 28476 bp 63.57 23.67 84.92
cn_combo_scaffold_3169 PLASMID2_19
Class: Betaproteobacteria (61.76%)
34 27081 bp 61.00 610.03 88.67
cn_combo_scaffold_1835 PLASMID2_6
Phylum: Proteobacteria (59.38%)
32 29503 bp 53.25 23.64 75.32
cn_combo_scaffold_1977 PLASMID2_8
Class: Betaproteobacteria (70.97%)
31 27575 bp 57.76 936.33 90.83
cn_combo_scaffold_1987 PLASMID2_9
Order: Pseudonocardiales (53.33%)
30 34653 bp 72.61 616.74 86.19
cn_combo_scaffold_2205 PLASMID2_11
Order: Burkholderiales (58.62%)
29 24790 bp 65.52 113.38 87.47
cn_combo_scaffold_1765 PLASMID2_5
Class: Alphaproteobacteria (60.71%)
28 30330 bp 63.25 25.06 83.24
cn_combo_scaffold_2040 PLASMID2_10
Phylum: Proteobacteria (61.54%)
26 26863 bp 63.72 11.51 96.15
cn_combo_scaffold_5729 PLASMID2_29
Species: Pseudomonas aeruginosa (66.67%)
24 20903 bp 63.89 96.45 93.65
cn_combo_scaffold_2140 PLASMID2_75
Class: Betaproteobacteria (50%)
22 25622 bp 69.95 130.54 92.70
cn_combo_scaffold_3101 PLASMID2_18 21 18364 bp 59.48 11.90 84.44
cn_combo_scaffold_3999 PLASMID2_48e
Species: Pseudonocardia dioxanivorans (70%)
20 14605 bp 69.87 212.03 92.04
cn_combo_scaffold_6891 PLASMID2_76
Order: Burkholderiales (73.68%)
19 14686 bp 64.16 32.46 71.31
cn_combo_scaffold_2988 PLASMID2_47a
Class: Alphaproteobacteria (78.95%)
19 18916 bp 63.32 101.28 96.09
cn_combo_scaffold_4351 PLASMID2_79
Species: Paracoccus sp. 361 (57.89%)
19 17701 bp 62.76 66.54 84.54
cn_combo_scaffold_3005 PLASMID2_17
Domain: Bacteria (73.68%)
19 18844 bp 61.16 15.43 93.40
cn_combo_scaffold_3410 PLASMID2_59
Species: Sulfitobacter pseudonitzschiae (84.21%)
19 16912 bp 62.22 98.51 89.71
cn_combo_scaffold_2754 PLASMID2_15
Domain: Bacteria (50%)
18 20331 bp 63.07 38.75 82.69
cn_combo_scaffold_2702 PLASMID2_48b
Order: Flavobacteriales (52.94%)
17 20769 bp 37.34 13.76 92.45
cn_combo_scaffold_3642 PLASMID2_25
Species: Pseudonocardia dioxanivorans (64.71%)
17 15805 bp 68.50 309.81 83.86
cn_combo_scaffold_3525 PLASMID2_21 16 16291 bp 63.29 56.22 67.47
cn_combo_scaffold_4485 PLASMID2_74
Order: Rhizobiales (60%)
15 14337 bp 62.70 10.46 77.92
cn_combo_scaffold_6026 PLASMID2_47b
Class: Betaproteobacteria (64.29%)
14 9962 bp 53.27 95.60 73.12
cn_combo_scaffold_4799 PLASMID2_45b
Species: Pseudomonas aeruginosa (50%)
14 12279 bp 62.82 15.07 73.74
cn_combo_scaffold_3530 PLASMID2_24
Class: Betaproteobacteria (85.71%)
14 16256 bp 57.45 1397.10 92.70
cn_combo_scaffold_5571 PLASMID2_28
Genus: Sphingobium (85.71%)
14 10709 bp 61.79 55.26 92.08
cn_combo_scaffold_8134 PLASMID2_33
Order: Rhizobiales (50%)
14 8273 bp 64.16 105.26 83.22
cn_combo_scaffold_3323 PLASMID2_53
Class: Gammaproteobacteria (69.23%)
13 17255 bp 62.15 28.09 88.51
cn_combo_scaffold_10752 PLASMID2_52
Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (61.54%)
13 14158 bp 68.25 110.61 94.91
cn_combo_scaffold_3544 PLASMID2_22
Species: Pseudonocardia dioxanivorans (92.31%)
13 16214 bp 68.53 311.44 81.58
cn_combo_scaffold_6738 PLASMID2_30
Class: Betaproteobacteria (84.62%)
13 12055 bp 58.73 1131.12 83.44
cn_combo_scaffold_11510 PLASMID2_48d
Order: Burkholderiales (58.33%)
12 7789 bp 60.73 48.76 92.75
cn_combo_scaffold_5440 PLASMID2_78
Class: Alphaproteobacteria (50%)
12 10918 bp 50.93 84.43 86.55
cn_combo_scaffold_3504 PLASMID2_20 12 16352 bp 58.94 26.46 87.40
cn_combo_scaffold_5553 PLASMID2_27
Species: Sphingomonas sp. LH128 (66.67%)
12 10749 bp 66.59 154.35 91.49
cn_combo_scaffold_10577 PLASMID2_40
Class: Betaproteobacteria (75%)
12 5990 bp 59.43 2021.67 87.30
cn_combo_scaffold_25295 PLASMID2_72
Phylum: Proteobacteria (54.55%)
11 6710 bp 57.06 154.80 79.63
Displaying items 1-50 of 82 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.