ggKbase home page
Advanced Search
Search Help

CN-SCN_Pseudonocardia_86x

CN-SCN_Pseudonocardia_dioxanivorans_72_87
In projects: CN-SCN

Consensus taxonomy: Pseudonocardia dioxanivorans  →  Pseudonocardia  →  Pseudonocardiales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 86.84 Longest contig: 218.34 Kbp Bin length: 6.55 Mbp GC content: 72.03 %
Contigs count: 396 Features count: 6738 rRNAs count: 0 tRNAs count: 41

Genome completeness

partial RP 15 / 55 MC: 1 BSCG 14 / 51 MC: 2 ASCG 7 / 38 MC: 1

Description

Partial 14

Displaying items 151-200 of 396 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_8308 PSE87_179
Species: Pseudonocardia dioxanivorans (77.78%)
9 8250 bp 73.12 84.19 89.13
cn_combo_scaffold_5739 PSE87_110
Order: Pseudonocardiales (53.33%)
15 15402 bp 71.52 92.53 89.21
cn_combo_scaffold_6623 PSE87_136
Species: Pseudonocardia dioxanivorans (100%)
9 9158 bp 73.33 89.62 89.23
cn_combo_scaffold_9461 PSE87_207
Species: Pseudonocardia dioxanivorans (100%)
11 12406 bp 71.98 89.30 89.33
cn_combo_scaffold_2306 PSE87_366
Class: Actinobacteria (83.33%)
36 41255 bp 73.30 89.96 89.34
cn_combo_scaffold_7239 PSE87_387
Order: Pseudonocardiales (70%)
10 8464 bp 72.18 87.70 89.35
cn_combo_scaffold_12503 PSE87_287
Species: Pseudonocardia dioxanivorans (83.33%)
12 8782 bp 72.56 90.36 89.36
cn_combo_scaffold_12820 PSE87_293
Species: Pseudonocardia dioxanivorans (100%)
7 5008 bp 73.28 91.51 89.44
cn_combo_scaffold_4332 PSE87_65
Species: Pseudonocardia dioxanivorans (91.89%)
37 31223 bp 73.41 83.19 89.51
cn_combo_scaffold_4681 PSE87_71
Species: Pseudonocardia dioxanivorans (100%)
14 15663 bp 73.47 86.86 89.52
cn_combo_scaffold_7559 PSE87_166
Species: Pseudonocardia dioxanivorans (80%)
15 15419 bp 73.79 82.63 89.56
cn_combo_scaffold_9611 PSE87_212
Species: Pseudonocardia dioxanivorans (100%)
5 6546 bp 75.33 79.41 89.64
cn_combo_scaffold_3584 PSE87_48
Species: Pseudonocardia dioxanivorans (66.67%)
27 24062 bp 72.79 87.69 89.64
cn_combo_scaffold_15151 PSE87_314
Species: Pseudonocardia dioxanivorans (100%)
7 6697 bp 72.93 86.70 89.68
cn_combo_scaffold_7271 PSE87_157
Species: Pseudonocardia dioxanivorans (100%)
9 8861 bp 74.40 81.65 89.69
cn_combo_scaffold_2355 PSE87_19
Species: Pseudonocardia dioxanivorans (79.41%)
34 35127 bp 73.46 84.29 89.73
cn_combo_scaffold_7981 PSE87_173
Species: Pseudonocardia dioxanivorans (73.33%)
15 15055 bp 73.76 83.85 89.75
cn_combo_scaffold_9637 PSE87_214
Species: Pseudonocardia dioxanivorans (62.5%)
8 6773 bp 73.32 85.94 89.78
cn_combo_scaffold_2561 PSE87_23
Order: Pseudonocardiales (52.54%)
59 55036 bp 73.49 85.30 89.80
cn_combo_scaffold_13458 PSE87_298
Species: Pseudonocardia dioxanivorans (50%)
10 8987 bp 71.74 83.94 89.83
cn_combo_scaffold_5353 PSE87_97
Species: Pseudonocardia dioxanivorans (66.67%)
15 11049 bp 65.71 67.87 89.85
cn_combo_scaffold_2774 PSE87_25
Species: Pseudonocardia dioxanivorans (79.17%)
24 25190 bp 72.77 89.39 89.86
cn_combo_scaffold_15846 PSE87_323
Species: Pseudonocardia dioxanivorans (100%)
7 6016 bp 73.75 87.78 89.86
cn_combo_scaffold_12538 PSE87_288
Species: Pseudonocardia dioxanivorans (85.71%)
7 5900 bp 71.69 90.54 89.90
cn_combo_scaffold_10006 PSE87_223
Species: Pseudonocardia dioxanivorans (100%)
10 6310 bp 73.14 93.04 89.90
cn_combo_scaffold_6876 PSE87_145
Species: Pseudonocardia dioxanivorans (58.82%)
17 15111 bp 73.53 88.31 89.93
cn_combo_scaffold_18941 PSE87_336
Species: Pseudonocardia dioxanivorans (85.71%)
7 6390 bp 72.21 90.44 89.95
cn_combo_scaffold_8358 PSE87_180
Species: Pseudonocardia dioxanivorans (100%)
7 7473 bp 73.68 90.35 89.96
cn_combo_scaffold_7845 PSE87_391
Order: Pseudonocardiales (72.73%)
11 7895 bp 73.27 87.90 89.98
cn_combo_scaffold_7456 PSE87_164
Species: Pseudonocardia dioxanivorans (88.89%)
9 8257 bp 74.13 87.71 90.00
cn_combo_scaffold_9492 PSE87_208
Species: Pseudonocardia dioxanivorans (88.89%)
9 6631 bp 73.49 88.51 90.08
cn_combo_scaffold_4938 PSE87_78
Species: Pseudonocardia dioxanivorans (100%)
13 15775 bp 73.79 84.18 90.09
cn_combo_scaffold_2771 PSE87_370
Class: Actinobacteria (82.61%)
23 23045 bp 74.09 86.02 90.20
cn_combo_scaffold_10620 PSE87_241
Species: Pseudonocardia dioxanivorans (88.89%)
9 8910 bp 70.63 91.21 90.20
cn_combo_scaffold_2654 PSE87_401
Order: Micrococcales (68%)
25 21076 bp 68.97 58.26 90.24
cn_combo_scaffold_5391 PSE87_99
Species: Pseudonocardia dioxanivorans (71.43%)
21 22298 bp 73.25 85.19 90.28
cn_combo_scaffold_12617 PSE87_291
Species: Pseudonocardia dioxanivorans (100%)
8 5080 bp 74.41 83.35 90.30
cn_combo_scaffold_5208 PSE87_86
Species: Pseudonocardia dioxanivorans (90%)
10 11319 bp 72.21 84.67 90.30
cn_combo_scaffold_616 PSE87_2
Class: Actinobacteria (73.24%)
71 66698 bp 71.68 88.85 90.30
cn_combo_scaffold_9480 PSE87_209
Species: Pseudonocardia dioxanivorans (78.26%)
23 20650 bp 72.62 89.88 90.31
cn_combo_scaffold_6521 PSE87_133
Species: Pseudonocardia dioxanivorans (60%)
15 10735 bp 74.09 85.96 90.32
cn_combo_scaffold_8443 PSE87_182
Species: Pseudonocardia dioxanivorans (88.89%)
9 8453 bp 74.06 82.44 90.39
cn_combo_scaffold_10546 PSE87_236
Species: Pseudonocardia dioxanivorans (83.33%)
6 6010 bp 73.34 83.41 90.40
cn_combo_scaffold_5527 PSE87_103
Species: Pseudonocardia dioxanivorans (95.65%)
23 20807 bp 74.77 78.79 90.42
cn_combo_scaffold_2410 PSE87_20
Species: Pseudonocardia dioxanivorans (53.33%)
30 24446 bp 72.42 88.72 90.47
cn_combo_scaffold_6205 PSE87_125
Species: Pseudonocardia dioxanivorans (87.5%)
8 9719 bp 75.01 78.64 90.53
cn_combo_scaffold_1735 PSE87_362
Class: Actinobacteria (85.37%)
41 40554 bp 71.86 88.00 90.62
cn_combo_scaffold_3947 PSE87_55
Species: Pseudonocardia dioxanivorans (83.33%)
18 19041 bp 73.13 87.77 90.66
cn_combo_scaffold_16556 PSE87_327
Species: Pseudonocardia dioxanivorans (100%)
7 7257 bp 73.74 85.78 90.66
cn_combo_scaffold_5776 PSE87_111
Species: Pseudonocardia dioxanivorans (81.82%)
11 10347 bp 71.71 88.88 90.66
Displaying items 151-200 of 396 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.