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CN-SCN_Verrucomicrobia_15x

CN-SCN_Bacteria_57_18
In projects: CN-SCN

Consensus taxonomy: Bacteria

Taxonomy override: Verrucomicrobia

Description

Fragment 9

Displaying items 51-74 of 74 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_5944 VER15_72 19 10080 bp 55.43 15.07 90.68
cn_combo_scaffold_7681 VER15_10
Domain: Bacteria (100%)
8 8029 bp 53.32 13.65 90.68
cn_combo_scaffold_1795 VER15_1
Domain: Bacteria (66.67%)
33 29945 bp 57.71 22.37 90.40
cn_combo_scaffold_1947 VER15_3
Domain: Bacteria (91.67%)
24 27959 bp 57.27 18.56 90.36
cn_combo_scaffold_10171 VER15_54 13 6229 bp 58.44 23.66 90.26
cn_combo_scaffold_11675 VER15_61 7 5448 bp 54.86 10.65 90.14
cn_combo_scaffold_7204 VER15_8
Domain: Bacteria (81.82%)
11 8497 bp 56.10 15.38 90.10
cn_combo_scaffold_8394 VER15_74
Phylum: Proteobacteria (50%)
6 7434 bp 55.42 12.89 89.79
cn_combo_scaffold_6485 VER15_43 10 9334 bp 56.36 15.81 89.05
cn_combo_scaffold_741 VER15_38
Domain: Bacteria (68.97%)
58 59925 bp 58.14 24.11 88.55
cn_combo_scaffold_5612 VER15_71 18 13625 bp 56.18 14.86 88.51
cn_combo_scaffold_9934 VER15_53
Domain: Bacteria (100%)
6 6355 bp 56.93 16.59 87.62
cn_combo_scaffold_11212 VER15_59
Domain: Bacteria (57.14%)
7 5668 bp 56.23 12.46 87.12
cn_combo_scaffold_7335 VER15_45 8 8365 bp 57.49 22.14 86.61
cn_combo_scaffold_10849 VER15_23
Species: Chthoniobacter flavus (60%)
5 5846 bp 55.82 13.60 86.16
cn_combo_scaffold_9920 VER15_15
Species: Pedosphaera parvula (50%)
10 6365 bp 57.55 13.21 85.36
cn_combo_scaffold_12092 VER15_65 7 5276 bp 52.43 8.36 84.38
cn_combo_scaffold_1920 VER15_2
Domain: Bacteria (62.07%)
29 28329 bp 57.27 19.92 84.10
cn_combo_scaffold_12708 VER15_32
Domain: Bacteria (66.67%)
6 5048 bp 52.20 9.89 82.25
cn_combo_scaffold_11473 VER15_60
Domain: Bacteria (75%)
8 5545 bp 55.00 12.01 80.72
cn_combo_scaffold_10508 VER15_22
Species: Pedosphaera parvula (57.14%)
7 6029 bp 55.66 13.10 80.11
cn_combo_scaffold_10741 VER15_56
Domain: Bacteria (83.33%)
6 5903 bp 55.36 16.04 79.64
cn_combo_scaffold_12499 VER15_67
Domain: Bacteria (85.71%)
7 5123 bp 53.70 11.58 76.60
cn_combo_scaffold_13275 VER15_69 11 5976 bp 51.54 11.36 72.09
Displaying items 51-74 of 74 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.