ggKbase home page
Advanced Search
Search Help

CN-SCN_Xanthomonadaceae_48x

CN-SCN_Xanthomonadales_69_49
In projects: CN-SCN

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 49.15 Longest contig: 56.08 Kbp Bin length: 3.65 Mbp GC content: 68.82 %
Contigs count: 344 Features count: 3771 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3

Description

Partial double 6 and 6

Displaying items 151-200 of 344 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_11012 XAN48_244
Order: Xanthomonadales (55.56%)
9 10176 bp 71.60 51.06 87.85
cn_combo_scaffold_11031 XAN48_245
Order: Xanthomonadales (88.89%)
9 6700 bp 69.22 50.90 91.34
cn_combo_scaffold_11058 XAN48_247
Order: Xanthomonadales (55.56%)
9 5745 bp 67.75 45.48 89.71
cn_combo_scaffold_11422 XAN48_257
Genus: Lysobacter (77.78%)
9 5575 bp 68.59 48.61 95.03
cn_combo_scaffold_3773 XAN48_36
Genus: Lysobacter (55.56%)
9 15323 bp 71.28 51.11 96.42
cn_combo_scaffold_4063 XAN48_44
Order: Xanthomonadales (88.89%)
9 14390 bp 71.12 55.35 94.09
cn_combo_scaffold_14243 XAN48_321
Genus: Lysobacter (66.67%)
9 8012 bp 69.43 48.17 93.65
cn_combo_scaffold_14664 XAN48_324
Genus: Lysobacter (55.56%)
9 8595 bp 69.20 54.92 96.27
cn_combo_scaffold_18683 XAN48_334
Genus: Lysobacter (55.56%)
9 5739 bp 71.37 55.88 92.68
cn_combo_scaffold_5997 XAN48_101
Order: Xanthomonadales (55.56%)
9 9995 bp 70.32 49.60 91.37
cn_combo_scaffold_6175 XAN48_107
Species: Pseudoxanthomonas suwonensis (55.56%)
9 10401 bp 60.34 40.55 94.64
cn_combo_scaffold_6206 XAN48_108
Order: Xanthomonadales (88.89%)
9 9714 bp 63.21 47.45 95.89
cn_combo_scaffold_6366 XAN48_114
Species: Xanthomonas vesicatoria (55.56%)
9 10291 bp 63.87 33.37 97.69
cn_combo_scaffold_6708 XAN48_123
Genus: Lysobacter (55.56%)
9 9073 bp 70.20 53.52 94.90
cn_combo_scaffold_6713 XAN48_124
Order: Xanthomonadales (66.67%)
9 9067 bp 71.45 49.60 97.21
cn_combo_scaffold_6752 XAN48_125
Order: Xanthomonadales (66.67%)
9 9020 bp 70.01 46.85 97.25
cn_combo_scaffold_7124 XAN48_129
Order: Xanthomonadales (66.67%)
9 8577 bp 70.26 49.34 94.79
cn_combo_scaffold_7121 XAN48_130
Order: Xanthomonadales (77.78%)
9 8581 bp 71.67 51.17 94.88
cn_combo_scaffold_7222 XAN48_132
Order: Xanthomonadales (66.67%)
9 9302 bp 67.28 48.40 84.69
cn_combo_scaffold_7449 XAN48_139
Genus: Lysobacter (55.56%)
9 8666 bp 71.00 52.73 90.56
cn_combo_scaffold_7633 XAN48_144
Order: Xanthomonadales (88.89%)
9 8078 bp 69.30 49.48 94.44
cn_combo_scaffold_11583 XAN48_341a
Order: Xanthomonadales (55.56%)
9 5496 bp 69.80 59.90 88.10
cn_combo_scaffold_8098 XAN48_157
Order: Xanthomonadales (66.67%)
9 7680 bp 70.51 48.59 87.23
cn_combo_scaffold_8095 XAN48_158
Order: Xanthomonadales (77.78%)
9 7683 bp 68.85 49.26 91.64
cn_combo_scaffold_8238 XAN48_163
Phylum: Proteobacteria (88.89%)
9 7565 bp 69.46 50.65 92.56
cn_combo_scaffold_8485 XAN48_166
Order: Xanthomonadales (77.78%)
9 7881 bp 69.20 52.13 81.42
cn_combo_scaffold_8624 XAN48_170
Genus: Xanthomonas (66.67%)
9 7266 bp 63.39 11.95 91.58
cn_combo_scaffold_8673 XAN48_172
Order: Xanthomonadales (55.56%)
9 7232 bp 63.41 9.31 92.09
cn_combo_scaffold_8672 XAN48_173
Genus: Lysobacter (66.67%)
9 10761 bp 68.55 51.83 90.80
cn_combo_scaffold_8838 XAN48_177
Genus: Lysobacter (66.67%)
9 7120 bp 69.30 44.93 94.76
cn_combo_scaffold_9118 XAN48_181
Order: Xanthomonadales (55.56%)
9 6898 bp 68.85 48.52 90.27
cn_combo_scaffold_9211 XAN48_187
Order: Xanthomonadales (77.78%)
9 6831 bp 70.12 47.18 89.94
cn_combo_scaffold_9460 XAN48_195
Genus: Lysobacter (66.67%)
9 6645 bp 68.22 47.87 91.24
cn_combo_scaffold_9501 XAN48_198
Order: Xanthomonadales (77.78%)
9 6624 bp 70.94 53.41 92.07
cn_combo_scaffold_9622 XAN48_203
Genus: Lysobacter (55.56%)
9 7304 bp 72.02 50.77 95.66
cn_combo_scaffold_9667 XAN48_205
Genus: Lysobacter (62.5%)
8 6515 bp 69.56 50.70 95.55
cn_combo_scaffold_9838 XAN48_207
Genus: Lysobacter (87.5%)
8 9094 bp 71.33 51.28 96.36
cn_combo_scaffold_9879 XAN48_209
Genus: Pseudoxanthomonas (50%)
8 9540 bp 70.44 50.20 84.97
cn_combo_scaffold_9961 XAN48_213
Order: Xanthomonadales (62.5%)
8 6571 bp 68.91 50.81 90.49
cn_combo_scaffold_10024 XAN48_215
Genus: Lysobacter (50%)
8 6302 bp 70.18 54.65 89.40
cn_combo_scaffold_10039 XAN48_216
Genus: Lysobacter (62.5%)
8 6294 bp 71.81 46.77 94.95
cn_combo_scaffold_10337 XAN48_223
Order: Xanthomonadales (75%)
8 8976 bp 72.27 51.57 81.22
cn_combo_scaffold_11338 XAN48_251
Genus: Lysobacter (62.5%)
8 5608 bp 69.70 46.79 91.21
cn_combo_scaffold_11817 XAN48_273
Genus: Lysobacter (50%)
8 7043 bp 70.17 48.22 93.03
cn_combo_scaffold_11902 XAN48_278
Genus: Lysobacter (50%)
8 5355 bp 69.80 48.91 92.38
cn_combo_scaffold_12125 XAN48_287
Order: Xanthomonadales (50%)
8 8170 bp 69.17 50.17 91.51
cn_combo_scaffold_12183 XAN48_290
Order: Xanthomonadales (75%)
8 5241 bp 69.72 46.14 91.64
cn_combo_scaffold_12215 XAN48_294
Order: Xanthomonadales (87.5%)
8 5229 bp 70.87 50.55 91.85
cn_combo_scaffold_12570 XAN48_300
Genus: Lysobacter (62.5%)
8 5096 bp 68.01 48.25 94.66
cn_combo_scaffold_12575 XAN48_301
Order: Xanthomonadales (87.5%)
8 5094 bp 68.81 51.37 94.70
Displaying items 151-200 of 344 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.