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CN-SCN_Xanthomonadaceae_123x

CN-SCN_Xanthomonadales_69_122
In projects: CN-SCN

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 122.41 Longest contig: 547.84 Kbp Bin length: 8.49 Mbp GC content: 69.05 %
Contigs count: 81 Features count: 7252 rRNAs count: 0 tRNAs count: 99

Genome completeness

megabin RP 52 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 13 / 38 MC: 12

Description

Full double 51 and 52

Displaying items 1-50 of 81 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_56 XAN121_double_50
Order: Xanthomonadales (58.37%)
466 547839 bp 68.66 130.46 88.48
cn_combo_scaffold_232 XAN121_double_29
Genus: Stenotrophomonas (51.13%)
397 439027 bp 69.84 109.13 90.89
cn_combo_scaffold_68 XAN121_double_5
Genus: Stenotrophomonas (50.4%)
379 411447 bp 69.71 108.55 91.37
cn_combo_scaffold_151 XAN121_double_12
Genus: Stenotrophomonas (58.72%)
281 302819 bp 69.51 107.89 90.97
cn_combo_scaffold_258 XAN121_double_23
Genus: Stenotrophomonas (50.18%)
281 301607 bp 69.58 117.49 89.31
cn_combo_scaffold_37 XAN121_double_53a
Order: Xanthomonadales (54.84%)
279 334358 bp 69.39 122.60 90.10
cn_combo_scaffold_100 XAN121_double_6
Genus: Stenotrophomonas (55.22%)
268 324883 bp 69.90 120.07 91.59
cn_combo_scaffold_127 XAN121_double_52
Order: Xanthomonadales (54%)
250 338826 bp 69.57 136.74 88.34
cn_combo_scaffold_149 XAN121_double_51
Order: Xanthomonadales (51.2%)
250 350166 bp 68.91 113.18 88.16
cn_combo_scaffold_41 XAN121_double_55a
Order: Xanthomonadales (54.46%)
202 234804 bp 69.30 120.91 88.76
cn_combo_scaffold_296 XAN121_double_21
Genus: Stenotrophomonas (58.25%)
194 217806 bp 70.18 110.89 90.07
cn_combo_scaffold_506 XAN121_double_54
Class: Gammaproteobacteria (64.07%)
167 238654 bp 69.85 146.78 87.08
cn_combo_scaffold_110 XAN121_double_4
Order: Xanthomonadales (77.99%)
159 176906 bp 69.70 110.51 92.32
cn_combo_scaffold_186 XAN121_double_13
Genus: Stenotrophomonas (52.83%)
159 182501 bp 69.47 116.24 86.81
cn_combo_scaffold_109 XAN121_double_57
Order: Xanthomonadales (55.92%)
152 167968 bp 69.73 131.52 90.00
cn_combo_scaffold_154 XAN121_double_7
Order: Xanthomonadales (87.41%)
135 144851 bp 69.88 106.02 91.47
cn_combo_scaffold_756 XAN121_double_36
Order: Xanthomonadales (90.55%)
127 139326 bp 68.98 113.20 91.08
cn_combo_scaffold_451 XAN121_double_58
Class: Gammaproteobacteria (62.7%)
126 159662 bp 67.63 152.96 88.08
cn_combo_scaffold_195 XAN121_double_14
Genus: Stenotrophomonas (54.03%)
124 130417 bp 69.23 110.35 90.93
cn_combo_scaffold_873 XAN121_double_42
Order: Xanthomonadales (74.19%)
124 133781 bp 68.65 114.24 89.41
cn_combo_scaffold_163 XAN121_double_60
Order: Xanthomonadales (56.91%)
123 140976 bp 68.23 116.53 88.27
cn_combo_scaffold_862 XAN121_double_40
Genus: Stenotrophomonas (62.71%)
118 127876 bp 68.24 108.54 90.48
cn_combo_scaffold_173 XAN121_double_61
Order: Xanthomonadales (53.04%)
115 136926 bp 68.14 112.36 87.64
cn_combo_scaffold_158 XAN121_double_59a
Class: Gammaproteobacteria (60.71%)
112 144190 bp 68.81 117.89 89.37
cn_combo_scaffold_203 XAN121_double_62a
Order: Xanthomonadales (62.26%)
106 134569 bp 69.03 116.75 88.62
cn_combo_scaffold_382 XAN121_double_66
Order: Xanthomonadales (64.21%)
95 99981 bp 67.81 117.52 88.74
cn_combo_scaffold_761 XAN121_double_35
Order: Xanthomonadales (83.16%)
95 108177 bp 68.53 107.03 89.78
cn_combo_scaffold_349 XAN121_double_22
Order: Xanthomonadales (92.55%)
94 119053 bp 69.79 118.95 91.76
cn_combo_scaffold_1131 XAN121_double_64a
Class: Gammaproteobacteria (64.84%)
91 105872 bp 69.03 147.21 84.46
cn_combo_scaffold_298 XAN121_double_63
Order: Xanthomonadales (66.67%)
90 120402 bp 69.70 141.31 89.22
cn_combo_scaffold_307 XAN121_double_65a
Order: Xanthomonadales (56.47%)
85 103040 bp 68.53 148.10 90.28
cn_combo_scaffold_334 XAN121_double_67a
Order: Xanthomonadales (51.81%)
83 99464 bp 67.52 144.85 90.42
cn_combo_scaffold_481 XAN121_double_71a
Order: Xanthomonadales (58.44%)
77 78899 bp 68.67 125.76 87.04
cn_combo_scaffold_480 XAN121_double_70a
Class: Gammaproteobacteria (64.47%)
76 78949 bp 69.51 117.77 87.79
cn_combo_scaffold_467 XAN121_double_69a
Order: Xanthomonadales (75.68%)
74 92095 bp 68.29 112.48 91.33
cn_combo_scaffold_549 XAN121_double_30
Order: Xanthomonadales (86.3%)
73 74042 bp 70.14 112.08 91.67
cn_combo_scaffold_1586 XAN121_double_78a
Order: Xanthomonadales (53.42%)
73 62469 bp 68.32 122.85 86.91
cn_combo_scaffold_609 XAN121_double_68a
Class: Gammaproteobacteria (80.28%)
71 94245 bp 69.41 125.65 90.13
cn_combo_scaffold_640 XAN121_double_76a
Order: Xanthomonadales (70.97%)
62 65275 bp 68.96 142.37 89.95
cn_combo_scaffold_2549 XAN121_double_75a
Order: Xanthomonadales (73.68%)
57 67205 bp 67.87 139.37 81.50
cn_combo_scaffold_907 XAN121_double_73a
Class: Gammaproteobacteria (60.71%)
56 73739 bp 67.80 158.63 85.07
cn_combo_scaffold_886 XAN121_double_72a
Class: Gammaproteobacteria (60.38%)
53 73781 bp 70.05 155.53 87.67
cn_combo_scaffold_1223 XAN121_double_77a
Class: Gammaproteobacteria (53.85%)
52 64725 bp 67.89 141.91 74.75
cn_combo_scaffold_1786 XAN121_double_53b
Genus: Stenotrophomonas (55.77%)
52 57073 bp 70.49 109.54 88.85
cn_combo_scaffold_562 XAN121_double_74
Order: Xanthomonadales (63.27%)
49 72171 bp 69.37 134.76 86.59
cn_combo_scaffold_1266 XAN121_double_47
Genus: Stenotrophomonas (65.96%)
47 52349 bp 68.17 107.36 89.90
cn_combo_scaffold_945 XAN121_double_80a
Order: Xanthomonadales (62.5%)
40 51075 bp 68.39 117.31 82.36
cn_combo_scaffold_1175 XAN121_double_82
Order: Xanthomonadales (69.44%)
36 42018 bp 68.31 134.12 89.93
cn_combo_scaffold_1138 XAN121_double_81
Order: Xanthomonadales (51.52%)
33 42988 bp 69.38 141.32 86.27
cn_combo_scaffold_2180 XAN121_double_59b
Order: Xanthomonadales (75%)
32 29323 bp 69.71 110.91 88.70
Displaying items 1-50 of 81 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.