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gwc2_scaffold_4534_32

Organism: GWC2_OD1_49_9

near complete RP 45 / 55 MC: 3 BSCG 48 / 51 MC: 1 ASCG 11 / 38 MC: 1
Location: 31020..31586

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_01_48_11_curated UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 188.0
  • Bit_score: 383
  • Evalue 2.40e-103
ECF subfamily RNA polymerase sigma-24 subunit KEGG
DB: KEGG
  • Identity: 34.5
  • Coverage: 177.0
  • Bit_score: 121
  • Evalue 2.00e-25
RNA polymerase, sigma-24 subunit, ECF subfamily similarity UNIREF
DB: UNIREF90
  • Identity: 0.0
  • Coverage: 0.0
  • Bit_score: 128
  • Evalue 2.00e+00

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Taxonomy

R_RIF_OD1_01_48_11 → RIF-OD1-1 → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 567
ATGCACGACCCGGGGGACTTAAGCGATGAACAGCTTGTAGAAAAGGTACGGGACGAAAACCACGGGCTGTATCGCCACATTGTCGAACGGTATGAACAAAAACTTCGCAGGTACGCGATGACGTTTGTTCATGACACGGAAGTAGCCGATGACGTCCTGCAGAATGCGTTCATGAAAGCGTACATCAACCTCTGGGGGTTTAACACGAAGAAGAAATTTTCCAGCTGGATATACCGGATAGTCCACAATGAGGCTATTAATGAAATTAAAAAGCGAAAAAAAGAGCTGTATCTCGAAGACACGCCCGAAGCGGAGATGGTAGAAAGCACTGAAGACGGTGCAGATGTTACGACGGACGGAAATCGAACAAAAGAAATGCTCGAACAAAGCCTCGAACGGCTGCCGCTCATGTACCGAGAACCGCTCGTACTCTACTATCTCGAAGAGCGCAGTTATCAGGAGATAGTAGACATTCTCCATATGCCGGTTGGTACCGTGGGCACAAGAATCCGCCGCGGGTTGGCGCTTTTAAAAAAAATCGTAGAAGATCATCATTCACCACTATGA
PROTEIN sequence
Length: 189
MHDPGDLSDEQLVEKVRDENHGLYRHIVERYEQKLRRYAMTFVHDTEVADDVLQNAFMKAYINLWGFNTKKKFSSWIYRIVHNEAINEIKKRKKELYLEDTPEAEMVESTEDGADVTTDGNRTKEMLEQSLERLPLMYREPLVLYYLEERSYQEIVDILHMPVGTVGTRIRRGLALLKKIVEDHHSPL*