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gwc2_scaffold_3459_17

Organism: GWC2_OD1_32_10

near complete RP 43 / 55 MC: 2 BSCG 47 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: 16122..17321

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor Tax=RIFOXYD1_FULL_RIF_OD1_06_32_13_curated UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 399.0
  • Bit_score: 766
  • Evalue 1.60e-218
RNA polymerase sigma factor RpoD KEGG
DB: KEGG
  • Identity: 56.8
  • Coverage: 368.0
  • Bit_score: 383
  • Evalue 6.00e-104
RNA polymerase sigma factor similarity UNIREF
DB: UNIREF90
  • Identity: 0.0
  • Coverage: 0.0
  • Bit_score: 383
  • Evalue 7.00e+00

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Taxonomy

RIFOXYD1_FULL_RIF_OD1_06_32_13_curated → RIF-OD1-6 → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 1200
ATGATAAATAAAAAGAAAAAAAGTAAGGTAAAAAAAGTTGTAGCTAAAAAAATAAAGAAAGTAAAAAAGATTAGGAATATCGTAAAGAGAGTGAAGAATAAATCTATAAAGAAAGTAAAAAAAACTAAAGCAAAGAAAGTTACTAAAGAACAAATAGAAACTCTTTTTCGAAAAGGTGAAGAGCGAGGTTTTATTACAACAGCTGAAATTTTAGATTCTATTCCAGATATAGAAAATAATATTGAAGAACTTGAAGACATTTATGAAAATTTAAGGTTAAGGGGTATTGAGATTAAACAAGCAAGAGAATATTTACAAGTACAAAGCAAAAAAGATAAAAAAGAAAAAAAACTTCTTGTTGGGAAAATTGATCCAATTCAAATGTATTTGAAAGAAATTGGCAGAGCAAGCTTTCTGTCTGCGCGCGAGGAAAAGGAATTGGCAAAAAGGATTGAGCTTGATGATGATGAGGCAAAGAACAAATTGGCCTTAGCTAACTTGCGATTAGTAGTTTCTATAGCTAAAAGATATGTTGGTAGATCACCAAATTTAACTTTACTTGATTTAATTCAAGAAGGGAACTTAGGGCTTTTTAAAGCAGTTAAGAAATTTGATTGGAAAAAAGGTTATAAATTTTCAACTTATGCAACTTGGTGGATCAGACAGTCCATAACTCGTGCTTTGGCGGACCAAGCAAGAACCATTAGAATTCCTGTGCATATGATTGAAACTATTTCTAAATATACAAAAGTAAGAAAAACACTATTGCAGGAATTGGGTAGAGAACCTTTGGCTGAAGAGATTTCTGCTGAAATGGGTCTTGAGGTTGATAAAGTACATTACATTAGAAAAATTGCTCAAAAAGCAGTTTCACTTGAAACTCCAGTTGGAGAAGACAAAGATAAACAAGATTCTGTTTTAGCTGAGTTTATTAAAGATGATAAATCAGTTGCTCCAAATACTGAGGCTTCAAGAAATTTGCTTAAAGAAAGACTAGGAGAAATTTCTACAGAACTTAGCCCAAGAGAGTTAAAAATTTTAGGAATGCGTTTTGGTCTTGATGATGGCATAATGCATACTCTTGAAGAAACAGGGGAGGAATTCGGGGTAACAAGGGAAAGAATTAGACAAATACAAGCCAAAGCTTTAGAGAAATTAAGAAGACATAAAGAATTAAGAAAAGTAAAAGATTATTACTAA
PROTEIN sequence
Length: 400
MINKKKKSKVKKVVAKKIKKVKKIRNIVKRVKNKSIKKVKKTKAKKVTKEQIETLFRKGEERGFITTAEILDSIPDIENNIEELEDIYENLRLRGIEIKQAREYLQVQSKKDKKEKKLLVGKIDPIQMYLKEIGRASFLSAREEKELAKRIELDDDEAKNKLALANLRLVVSIAKRYVGRSPNLTLLDLIQEGNLGLFKAVKKFDWKKGYKFSTYATWWIRQSITRALADQARTIRIPVHMIETISKYTKVRKTLLQELGREPLAEEISAEMGLEVDKVHYIRKIAQKAVSLETPVGEDKDKQDSVLAEFIKDDKSVAPNTEASRNLLKERLGEISTELSPRELKILGMRFGLDDGIMHTLEETGEEFGVTRERIRQIQAKALEKLRRHKELRKVKDYY*