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gwa2_scaffold_800_44

Organism: GWA2_Kazan_45_14

near complete RP 37 / 55 MC: 1 BSCG 44 / 51 ASCG 12 / 38 MC: 1
Location: comp(41264..42124)

Top 3 Functional Annotations

Value Algorithm Source
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_04_46_16_curated UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 286.0
  • Bit_score: 552
  • Evalue 4.60e-154
RpoD subfamily RNA polymerase sigma-70 subunit KEGG
DB: KEGG
  • Identity: 45.3
  • Coverage: 278.0
  • Bit_score: 225
  • Evalue 2.60e-56
RNA polymerase sigma factor similarity UNIREF
DB: UNIREF90
  • Identity: 0.0
  • Coverage: 0.0
  • Bit_score: 224
  • Evalue 3.00e+00

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Taxonomy

R_RIF_OD1_04_46_16 → RIF-OD1-4 → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 861
ATGAGCATTAGCAGAACAAGAACAAAGCAAGCGTCCTCTTTACGGCAATATCTAGAAGAGATTGGCCAGACGCCATTGTTAACCAGTGAGGAAGAGGCGAGATTGGCCATAAGAATTCAGGAAATGAATGATGAGGATGCGCGCCAGTTATTAATGAAAGCAAATTTGCGATTGGTTGTTAGTATTGCTAAGCAATATGCAGCGCCACAGGACCAGGATATGCTGCTGGACTTTATTCAAGAAGGGAACATGGGCCTGATGCGGGCGGTAGATCGCTTCAAGCCGGAATTTAAAACCCGCTTCTCAACTTATGGTGTGTATTGGATTAGGCAGGCGATTTTGCGGGCCTTAAAAGCACGCCGGATTGTTCGGTTGCCAGAGAACGTGGTTGATTTAGTAATGCAGATGAAGCGAGTACGGCAGGCTCTTTATCAGATATTTGGACGGTGGCCAACGGCGGATGAGTTAGCGGAAGAAATGGAAGTGCCAGTGAAAACGATAAATATGTTAGAAGCGGCGGGGGCGGAAGTGGTTTCGTTGGATCAGCCAGTGCGGGGTAAGGAGGGAGAAGAAGAAACACAGTTAAAGGATATGATTGAGGATACGGACACGATGAGTCCCAACCAGGAAACTCAACGTGAGATGGTACGAAACGAGATAAGTTCGGCAGTGGCATCTTTACCGCCGAGAGAAAGGAAGATACTTGAGTTAAGATTCGGTTTGGGAAATAAAATACGGCCTTACACATTAGAGGAGATTGGCCTAGAGTTTGGGATTAGCCGAGAGCGGGTGAGGCAACTACAAAACGTGGCTTTATCCAGATTGCGCCAACGGAAAACTATGCAGAATTTTTATGAGTAG
PROTEIN sequence
Length: 287
MSISRTRTKQASSLRQYLEEIGQTPLLTSEEEARLAIRIQEMNDEDARQLLMKANLRLVVSIAKQYAAPQDQDMLLDFIQEGNMGLMRAVDRFKPEFKTRFSTYGVYWIRQAILRALKARRIVRLPENVVDLVMQMKRVRQALYQIFGRWPTADELAEEMEVPVKTINMLEAAGAEVVSLDQPVRGKEGEEETQLKDMIEDTDTMSPNQETQREMVRNEISSAVASLPPRERKILELRFGLGNKIRPYTLEEIGLEFGISRERVRQLQNVALSRLRQRKTMQNFYE*