ggKbase | organisms

DOLJORAL78_Gammaproteobacteria_37_15

DOLJORAL78_Pseudomonadales_38_15

In projects: DOLJORAL78

Consensus taxonomy: Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: DolJOral78_UNK

Properties

Avg. coverage: 14.92 Longest contig: 121.63 Kbp Bin length: 1.79 Mbp GC content: 37.66 %

Contigs count: 179 Features count: 1780 rRNAs count: 0 tRNAs count: 36

Genome completeness

near complete RP 47 / 55 MC: 1 BSCG 45 / 51 ASCG 11 / 38

Displaying items 101-150 of 179 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
DolJOral78_scaffold_85991 Species: RIFOXYB12_FULL_Lentisphaerae_65_16_curated (50%)	2	1483 bp	38.30	15.68	96.09
DolJOral78_scaffold_163959 Species: Pandoraea oxalativorans (50%)	2	1228 bp	38.52	14.90	80.37
DolJOral78_scaffold_86284 Species: Thiothrix nivea (50%)	2	1479 bp	38.95	14.71	95.13
DolJOral78_scaffold_78142 Species: Actinobacillus succinogenes (50%)	2	1592 bp	36.43	16.21	91.21
DolJOral78_scaffold_188170 Species: Providencia alcalifaciens (50%)	2	1381 bp	36.06	14.55	102.10
DolJOral78_scaffold_170158 Species: Sulfurovum sp. NBC37-1 (50%)	2	1238 bp	38.93	16.96	89.90
DolJOral78_scaffold_99767 Species: Candidatus Thiomargarita nelsonii (50%)	2	1328 bp	38.78	13.44	90.81
DolJOral78_scaffold_144251 Species: Candidatus Competibacter denitrificans (50%)	2	1005 bp	39.00	14.18	97.61
DolJOral78_scaffold_135978 Species: Psychrobacter sp. G (50%)	2	1052 bp	37.45	17.82	80.42
DolJOral78_scaffold_89081 Species: Cardiobacterium hominis (50%)	2	1445 bp	36.61	18.37	103.18
DolJOral78_scaffold_141613 Species: Psychrobacter aquaticus (50%)	2	1019 bp	35.72	17.22	72.42
DolJOral78_scaffold_113089 Species: Glaciecola nitratireducens (50%)	2	1210 bp	36.61	14.26	34.71
DolJOral78_scaffold_61505 Species: Thiorhodococcus sp. AK35 (50%)	2	1891 bp	37.65	17.69	72.98
DolJOral78_scaffold_79925 Species: Idiomarina sp. A28L (50%)	2	1566 bp	38.63	18.20	68.01
DolJOral78_scaffold_103805 Species: Desulfobacula toluolica (50%)	2	1289 bp	36.00	13.03	48.41
DolJOral78_scaffold_90729 Species: Devosia soli (50%)	2	1425 bp	38.95	13.16	62.95
DolJOral78_scaffold_132784 Species: Cardiobacterium hominis (50%)	2	1072 bp	38.71	18.33	67.72
DolJOral78_scaffold_65064 Species: Cellvibrio sp. BR (50%)	2	1817 bp	37.42	14.45	88.83
DolJOral78_scaffold_98400 Species: Siccibacter turicensis (50%)	2	1341 bp	38.48	17.00	74.27
DolJOral78_scaffold_83397 Species: Xenorhabdus cabanillasii (100%)	2	1782 bp	37.93	14.65	71.89
DolJOral78_scaffold_248618 Species: Arenimonas metalli (50%)	2	1080 bp	36.30	13.75	91.39
DolJOral78_scaffold_55562 Species: Rhodobacter sp. SW2 (50%)	2	2036 bp	37.23	14.29	63.65
DolJOral78_scaffold_118255 Species: Pseudomonas mendocina (50%)	2	1170 bp	38.97	17.05	99.74
DolJOral78_scaffold_112627 Species: Marinobacterium sp. AK27 (50%)	2	1213 bp	38.99	16.69	86.81
DolJOral78_scaffold_26745 Species: Porphyromonadaceae bacterium COT-184 OH4590 (50%)	2	3392 bp	35.67	15.12	58.81
DolJOral78_scaffold_63514 Species: Vibrio tasmaniensis (50%)	2	1848 bp	35.93	12.74	75.97
DolJOral78_scaffold_119359 Species: Psychrobacter sp. PRwf-1 (50%)	2	1695 bp	36.76	12.92	86.37
DolJOral78_scaffold_89679 Species: Pseudomonas fluorescens (50%)	2	1438 bp	36.23	12.62	81.78
DolJOral78_scaffold_99360 Species: Vibrio sp. JCM 19241 (50%)	2	1332 bp	37.69	16.55	92.12
DolJOral78_scaffold_121851 Species: Shigella flexneri (50%)	2	1850 bp	38.22	17.68	99.41
DolJOral78_scaffold_106277 Species: Candidatus Contendobacter odensis (50%)	2	1267 bp	37.65	13.97	66.06
DolJOral78_scaffold_103632 Species: Candidatus Contendobacter odensis (50%)	2	1902 bp	38.70	18.06	100.47
DolJOral78_scaffold_65648 Species: CG_Delta_06 (100%)	2	1804 bp	37.20	14.63	30.10
DolJOral78_scaffold_99890 Species: gamma proteobacterium HdN1 (50%)	2	1326 bp	38.91	17.42	79.19
DolJOral78_scaffold_135331 Species: Colwellia psychrerythraea (50%)	2	1056 bp	36.27	14.77	78.98
DolJOral78_scaffold_125968 Species: Aliiglaciecola lipolytica (50%)	2	1732 bp	37.93	18.10	57.85
DolJOral78_scaffold_19971 Species: Cardiobacterium hominis (50%)	2	4160 bp	38.56	13.85	99.95
DolJOral78_scaffold_93250 Species: Hahella chejuensis (50%)	2	1396 bp	35.82	13.22	83.60
DolJOral78_scaffold_45761 Species: Alcaligenes faecalis (50%)	2	2337 bp	38.90	14.38	99.36
DolJOral78_scaffold_102898 Species: Cardiobacterium valvarum (50%)	2	1297 bp	36.62	14.80	84.43
DolJOral78_scaffold_103440 Species: BJP_08E140C01_10KDA_Burkholderiales_65_51 (100%)	2	1293 bp	38.75	18.21	80.74
DolJOral78_scaffold_110065 Species: Methyloglobulus morosus (50%)	2	1235 bp	36.92	13.24	83.56
DolJOral78_scaffold_74915 Species: Sedimenticola sp. SIP-G1 (50%)	2	1640 bp	36.83	17.20	78.66
DolJOral78_scaffold_148881 Species: Thiothrix nivea (50%)	2	1420 bp	37.18	16.48	76.69
DolJOral78_scaffold_127338 Species: Kangiella geojedonensis (50%)	2	1106 bp	38.97	16.55	89.51
DolJOral78_scaffold_110849 Species: Rheinheimera sp. A13L (50%)	2	1228 bp	38.68	16.12	98.94
DolJOral78_scaffold_73618 Species: RBG_16_Gamma2_60_9_curated (50%)	2	1661 bp	39.01	17.43	89.58
DolJOral78_scaffold_100242 Species: Methylomicrobium alcaliphilum (50%)	2	1323 bp	36.81	16.44	53.06
DolJOral78_scaffold_39432 Species: RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated (50%)	2	2587 bp	36.14	12.64	99.61
DolJOral78_scaffold_74418 Species: Cupriavidus basilensis (50%)	2	1648 bp	38.59	15.47	64.08

Displaying items 101-150 of 179 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (DOLJORAL78_Gammaproteobacteria_37_15) and add all its contigs / scaffolds to the organism you choose below

----- OR --------

Other organism

DOLJORAL78_Gammaproteobacteria_37_15

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

Processing

Terms of Service

Search Help