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DOLJORAL78_Gammaproteobacteria_43_18

DOLJORAL78_Gammaproteobacteria_44_18
In projects: DOLJORAL78

Consensus taxonomy: Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: DolJOral78_UNK

Properties

Avg. coverage: 17.85 Longest contig: 33.59 Kbp Bin length: 2.02 Mbp GC content: 43.89 %
Contigs count: 685 Features count: 2442 rRNAs count: 0 tRNAs count: 14

Genome completeness

partial RP 18 / 55 MC: 5 BSCG 22 / 51 MC: 7 ASCG 8 / 38 MC: 4
Displaying items 1-50 of 685 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
DolJOral78_scaffold_2965
Class: Gammaproteobacteria (77.42%)
31 33594 bp 43.48 19.75 88.94
DolJOral78_scaffold_3704
Class: Gammaproteobacteria (60.87%)
23 19543 bp 43.68 17.02 85.21
DolJOral78_scaffold_3417
Class: Gammaproteobacteria (59.09%)
22 22070 bp 42.39 16.94 87.01
DolJOral78_scaffold_6210
Class: Gammaproteobacteria (52.38%)
21 19848 bp 43.32 19.29 88.54
DolJOral78_scaffold_4099
Class: Gammaproteobacteria (61.9%)
21 23009 bp 43.19 18.89 86.80
DolJOral78_scaffold_2681
Class: Gammaproteobacteria (61.9%)
21 19435 bp 40.60 17.27 84.36
DolJOral78_scaffold_5669
Class: Gammaproteobacteria (72.22%)
18 19398 bp 45.01 17.61 92.70
DolJOral78_scaffold_4387
Class: Gammaproteobacteria (83.33%)
18 14849 bp 41.80 15.33 89.78
DolJOral78_scaffold_4186
Class: Gammaproteobacteria (72.22%)
18 15055 bp 42.99 17.60 83.78
DolJOral78_scaffold_8142
Class: Gammaproteobacteria (62.5%)
16 13858 bp 42.04 16.84 82.94
DolJOral78_scaffold_5967
Class: Gammaproteobacteria (53.33%)
15 14609 bp 47.58 17.22 94.28
DolJOral78_scaffold_12254
Class: Gammaproteobacteria (53.85%)
13 9674 bp 44.70 20.22 92.47
DolJOral78_scaffold_3496
Class: Gammaproteobacteria (69.23%)
13 15739 bp 43.51 18.08 95.97
DolJOral78_scaffold_5349
Class: Gammaproteobacteria (53.85%)
13 13460 bp 42.68 17.37 85.46
DolJOral78_scaffold_6429
Class: Gammaproteobacteria (66.67%)
12 11290 bp 40.61 16.57 87.58
DolJOral78_scaffold_7736
Class: Gammaproteobacteria (83.33%)
12 8440 bp 41.18 16.14 82.22
DolJOral78_scaffold_4667
Class: Gammaproteobacteria (66.67%)
12 11880 bp 42.33 19.17 91.69
DolJOral78_scaffold_9029
Class: Gammaproteobacteria (66.67%)
12 9124 bp 47.04 21.36 90.55
DolJOral78_scaffold_4720
Class: Gammaproteobacteria (58.33%)
12 14943 bp 39.62 16.03 78.24
DolJOral78_scaffold_8970
Class: Gammaproteobacteria (66.67%)
12 12296 bp 42.72 19.60 85.56
DolJOral78_scaffold_18474
Class: Gammaproteobacteria (58.33%)
12 7754 bp 47.42 18.82 94.52
DolJOral78_scaffold_16006
Class: Gammaproteobacteria (72.73%)
11 8919 bp 44.20 18.80 90.73
DolJOral78_scaffold_22687
Class: Gammaproteobacteria (72.73%)
11 7589 bp 39.41 20.08 90.68
DolJOral78_scaffold_6943
Class: Gammaproteobacteria (72.73%)
11 11189 bp 44.95 17.07 90.33
DolJOral78_scaffold_6725
Class: Gammaproteobacteria (54.55%)
11 8946 bp 41.08 17.15 85.31
DolJOral78_scaffold_7503
Class: Gammaproteobacteria (72.73%)
11 8279 bp 41.65 18.52 92.04
DolJOral78_scaffold_12470
Class: Gammaproteobacteria (54.55%)
11 11208 bp 41.27 15.15 83.00
DolJOral78_scaffold_5025
Class: Gammaproteobacteria (81.82%)
11 13208 bp 42.88 19.87 91.47
DolJOral78_scaffold_24239
Class: Gammaproteobacteria (81.82%)
11 8707 bp 47.12 19.88 91.64
DolJOral78_scaffold_4699
Class: Gammaproteobacteria (81.82%)
11 11821 bp 39.49 20.32 86.03
DolJOral78_scaffold_13085
Class: Gammaproteobacteria (50%)
10 6348 bp 45.46 17.37 83.84
DolJOral78_scaffold_7774
Class: Gammaproteobacteria (50%)
10 8064 bp 42.00 17.58 83.71
DolJOral78_scaffold_5254
Class: Gammaproteobacteria (50%)
10 10757 bp 43.09 18.45 90.81
DolJOral78_scaffold_7063
Class: Gammaproteobacteria (80%)
10 10111 bp 45.32 18.35 89.69
DolJOral78_scaffold_7383
Class: Gammaproteobacteria (70%)
10 8388 bp 46.35 18.79 89.16
DolJOral78_scaffold_21472
Class: Gammaproteobacteria (66.67%)
9 3961 bp 43.02 17.72 88.46
DolJOral78_scaffold_6440
Class: Gammaproteobacteria (77.78%)
9 9219 bp 44.89 17.33 94.37
DolJOral78_scaffold_13049
Class: Gammaproteobacteria (55.56%)
9 5573 bp 39.14 16.80 78.75
DolJOral78_scaffold_20005
Class: Gammaproteobacteria (66.67%)
9 6626 bp 40.90 15.89 92.23
DolJOral78_scaffold_6528
Class: Gammaproteobacteria (88.89%)
9 9131 bp 44.35 16.16 91.80
DolJOral78_scaffold_10388
Class: Gammaproteobacteria (77.78%)
9 6542 bp 48.46 17.98 97.17
DolJOral78_scaffold_10749
Species: Cardiobacterium valvarum (50%)
8 6387 bp 41.18 16.53 98.07
DolJOral78_scaffold_22446
Genus: Vibrio (62.5%)
8 7213 bp 41.95 16.78 94.66
DolJOral78_scaffold_14322
Class: Gammaproteobacteria (62.5%)
8 5240 bp 39.98 15.11 83.13
DolJOral78_scaffold_7995
Class: Gammaproteobacteria (50%)
8 7892 bp 44.17 16.19 94.84
DolJOral78_scaffold_9191
Class: Gammaproteobacteria (87.5%)
8 7127 bp 47.28 21.30 91.76
DolJOral78_scaffold_15194
Class: Gammaproteobacteria (87.5%)
8 6889 bp 47.19 19.12 85.31
DolJOral78_scaffold_10077
Class: Gammaproteobacteria (62.5%)
8 6686 bp 42.79 17.34 93.37
DolJOral78_scaffold_22812
Class: Gammaproteobacteria (87.5%)
8 3799 bp 39.72 19.47 64.20
DolJOral78_scaffold_8137
Class: Gammaproteobacteria (75%)
8 7783 bp 42.76 19.02 87.81
Displaying items 1-50 of 685 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.