ggKbase home page

DolZOral124_scaffold_1045

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_1045_1
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1..468)
-----------------
DNA (468bp)
protein (156aa)
UPF0758 protein Mbar_A2303 n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Y2303_METBF
DNA repair protein RadC
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
DolZOral124_scaffold_1045_2
Mollicutes bacterium HR1, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(468..1061)
-----------------
DNA (594bp)
protein (198aa)
Maf-like protein CINTURNW_0561 n=1 Tax=Clostridium intestinale URNW RepID=U2NT71_9CLOT
maf; Septum formation protein Maf
Maf-like protein maf {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1541959 species="Bacteria; Tenericutes; Mollicutes.;" source="Mollicutes bacterium HR1.;"
DolZOral124_scaffold_1045_3
Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1095..1826)
-----------------
DNA (732bp)
protein (244aa)
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B) RepID=E4S6N2_CALKI
3-oxoacyl-(acyl-carrier-protein) reductase
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:ADQ40647.1}; TaxID=632335 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Se
DolZOral124_scaffold_1045_4
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1850..2680)
-----------------
DNA (831bp)
protein (277aa)
Beta-propeller domain-containing protein, methanol dehydrogenase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LTE9_CLOCD
beta-propeller domain-containing protein, methanol dehydrogenase
Beta-propeller domain-containing protein, methanol dehydrogenase {ECO:0000313|EMBL:AEV69444.1}; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcacea
DolZOral124_scaffold_1045_5
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2673..3887)
-----------------
DNA (1215bp)
protein (405aa)
hypothetical protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2F09D
replication restart DNA helicase PriA
Replication restart DNA helicase PriA {ECO:0000313|EMBL:AEV69443.1}; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" sou
DolZOral124_scaffold_1045_6
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3998..6004)
-----------------
DNA (2007bp)
protein (669aa)
ATP-dependent DNA helicase RecG n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I387_CLOCE
ATP-dependent DNA helicase RecG
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:ACL76230.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulol
DolZOral124_scaffold_1045_7

Not on your lists

comp(6021..7658)
-----------------
DNA (1638bp)
protein (546aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2F336_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE05195.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
phosphatase
DolZOral124_scaffold_1045_8

Not on your lists

comp(7727..8083)
-----------------
DNA (357bp)
protein (119aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DHN6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE05196.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
DolZOral124_scaffold_1045_9
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8126..8527)
-----------------
DNA (402bp)
protein (134aa)
universal stress protein UspA n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0002481B07
UspA domain-containing protein
UspA domain-containing protein {ECO:0000313|EMBL:ABN54284.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocel
DolZOral124_scaffold_1045_10
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8586..9791)
-----------------
DNA (1206bp)
protein (402aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein T
Probable tRNA sulfurtransferase n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A041_MAHA5
thiamine biosynthesis/tRNA modification protein ThiI
DolZOral124_scaffold_1045_11
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9775..10932)
-----------------
DNA (1158bp)
protein (386aa)
iscS2; cysteine desulfurase IscS (EC:2.8.1.7)
aminotransferase V n=1 Tax=Brevibacillus brevis RepID=UPI0003732A47
Aminotransferase, class V {ECO:0000313|EMBL:AJG98057.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridi
DolZOral124_scaffold_1045_12
Thermoanaerobacter sp. X514, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10925..12316)
-----------------
DNA (1392bp)
protein (464aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:000025
Glycine--tRNA ligase n=6 Tax=Thermoanaerobacter RepID=B0K712_THEPX
glycyl-tRNA synthetase
DolZOral124_scaffold_1045_13
Desulfitobacterium dichloroeliminans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12345..13364)
-----------------
DNA (1020bp)
protein (340aa)
lipoate-protein ligase (EC:6.-.-.-)
Lipoate--protein ligase {ECO:0000256|SAAS:SAAS00026637}; EC=2.7.7.63 {ECO:0000256|SAAS:SAAS00026637};; TaxID=871963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitob
Lipoate-protein ligase n=1 Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0F903_DESDL rbh
DolZOral124_scaffold_1045_14
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13409..14728)
-----------------
DNA (1320bp)
protein (440aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5Y275_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA18914.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococ
pyrimidine-nucleoside phosphorylase
DolZOral124_scaffold_1045_15
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14817..15986)
-----------------
DNA (1170bp)
protein (390aa)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI000379EEC3
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EMS72051.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostri
diguanylate cyclase/phosphodiesterase
DolZOral124_scaffold_1045_16
Peptoniphilus indolicus, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16001..17689)
-----------------
DNA (1689bp)
protein (563aa)
DNA repair protein RecN n=1 Tax=Peptoniphilus indolicus ATCC 29427 RepID=G4D6N5_9FIRM
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=997350 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilacea
DNA repair protein RecN
DolZOral124_scaffold_1045_17
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17701..18153)
-----------------
DNA (453bp)
protein (151aa)
Arginine repressor n=1 Tax=Clostridium termitidis CT1112 RepID=S0FNL9_9CLOT
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1
arginine repressor
DolZOral124_scaffold_1045_18
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18358..20943)
-----------------
DNA (2586bp)
protein (862aa)
Chaperone ClpB 2 n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WWX4_9FIRM
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
ATP-dependent chaperone ClpB
DolZOral124_scaffold_1045_19
Bacillus sp. OxB-1, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21106..22158)
-----------------
DNA (1053bp)
protein (351aa)
Antifreeze protein n=1 Tax=Sporosarcina newyorkensis 2681 RepID=F9DN28_9BACL
antifreeze protein
Antifreeze protein {ECO:0000313|EMBL:BAQ11060.1}; TaxID=98228 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. (strain OxB-1).;"
DolZOral124_scaffold_1045_20
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22297..24618)
-----------------
DNA (2322bp)
protein (774aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SQK1_CLOC7
diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:ADL52207.1}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovo
DolZOral124_scaffold_1045_21
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24618..26927)
-----------------
DNA (2310bp)
protein (770aa)
Putative Signal transduction protein containing diguanylate cyclase/phosphodiesterase domain (GGDEF) and domain (EAL) n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PWZ1_CLOSD
putative Signal transduction protein containing diguanylate cyclase/phosphodiesterase domain (GGDEF) and domain (EAL)
Putative Signal transduction protein containing diguanylate cyclase/phosphodiesterase domain (GGDEF) and domain (EAL) {ECO:0000313|EMBL:CBH20956.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostri
DolZOral124_scaffold_1045_22
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27079..27603)
-----------------
DNA (525bp)
protein (175aa)
N-terminal of elongation factor Ts n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ARW1_9CLOT
N-terminal of elongation factor Ts {ECO:0000313|EMBL:EOC99882.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter
ubiquitin-associated domain-containing protein
DolZOral124_scaffold_1045_23
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27637..28401)
-----------------
DNA (765bp)
protein (255aa)
DNA repair protein RecO n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PSN9_CLOSD
recO; DNA double strand break repair and homologous recombination factor
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=499177 species="Bacteria; Firmicutes; Clostri
DolZOral124_scaffold_1045_24
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28398..29789)
-----------------
DNA (1392bp)
protein (464aa)
Magnesium transporter n=1 Tax=Thermincola potens (strain JR) RepID=D5XAQ2_THEPJ
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] lit
magnesium transporter mgtE
DolZOral124_scaffold_1045_25
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30177..31070)
-----------------
DNA (894bp)
protein (298aa)
GTPase Era n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=ERA_ALKOO
era; GTP-binding protein Era
GTPase Era {ECO:0000255|HAMAP-Rule:MF_00367}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Cl
DolZOral124_scaffold_1045_26
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31103..31495)
-----------------
DNA (393bp)
protein (131aa)
Cytidine deaminase {ECO:0000313|EMBL:CCC58158.1}; EC=3.5.4.5 {ECO:0000313|EMBL:CCC58158.1};; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" sourc
cdd; cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase n=1 Tax=Caloramator australicus RC3 RepID=G0V4W8_9CLOT
DolZOral124_scaffold_1045_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31515..31979)
-----------------
DNA (465bp)
protein (155aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=451754 species="Bacteria; Fi
Endoribonuclease YbeY n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RLF8_CLOPF
metalloprotease
DolZOral124_scaffold_1045_28
Mitsuokella sp. oral taxon 131, Mitsuokella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(32101..32283)
-----------------
DNA (183bp)
protein (61aa)
50S ribosomal protein L32 n=1 Tax=Mitsuokella sp. oral taxon 131 str. W9106 RepID=U2TAN7_9FIRM
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1321781 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Mitsuokella.;" source="Mitsuokella sp. oral t
rpmF; putative 50S ribosomal protein L32
DolZOral124_scaffold_1045_29
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(32353..32847)
-----------------
DNA (495bp)
protein (165aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5RZD8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ46158.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
hypothetical protein
DolZOral124_scaffold_1045_30
Parvimonas micra, Parvimonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32917..33264)
-----------------
DNA (348bp)
protein (116aa)
Histidine triad domain protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJ70_9FIRM
Histidine triad domain protein {ECO:0000313|EMBL:EDP24615.1}; TaxID=411465 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Parvimonas.;" source="Parvimonas micra ATCC 33270
HIT family hydrolase
Displaying items 1-30 of 40 in total

View Taxonomy