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DolZOral124_scaffold_1063

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_1063_1
[Eubacterium] nodatum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(158..1054)
-----------------
DNA (897bp)
protein (299aa)
Elongation factor Tu n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E5I7_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1161902 species="Bacteria; Firmicutes; Clostridia; Clostrid
tufB; protein chain elongation factor EF-Tu (duplicate of tufA)
DolZOral124_scaffold_1063_2
Parvimonas sp. oral taxon 110, Parvimonas, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1185..1307)
-----------------
DNA (123bp)
protein (41aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Parvimonas sp. oral taxon 393 str. F0440 RepID=F9PSE3_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=767100 species="Bacteria; Firmicutes; Clostridia; Clostridi
DolZOral124_scaffold_1063_3
[Eubacterium] infirmum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1337..3409)
-----------------
DNA (2073bp)
protein (691aa)
Elongation factor G n=1 Tax=Eubacterium infirmum F0142 RepID=H1PIL3_9FIRM rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=883109 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII.
fusA; elongation factor G
DolZOral124_scaffold_1063_4
[Eubacterium] infirmum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3447..3917)
-----------------
DNA (471bp)
protein (157aa)
30S ribosomal protein S7 n=1 Tax=Eubacterium infirmum F0142 RepID=H1PIL4_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=883109 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis.;" source="Eubacterium infi
30S ribosomal protein S7
DolZOral124_scaffold_1063_5
[Eubacterium] infirmum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4171..4587)
-----------------
DNA (417bp)
protein (139aa)
30S ribosomal protein S12 n=1 Tax=Eubacterium infirmum F0142 RepID=H1PIL5_9FIRM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=883109 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae S
SSU ribosomal protein S12P
DolZOral124_scaffold_1063_6
[Eubacterium] infirmum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4710..8618)
-----------------
DNA (3909bp)
protein (1303aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Eubacterium infirmum F0142 RepID=H1PIL6_9FIRM rbh
DolZOral124_scaffold_1063_7
[Eubacterium] sulci, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8639..12316)
-----------------
DNA (3678bp)
protein (1226aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Eubacterium infirmum F0142 RepID=H1PIL7_9FIRM rbh
DolZOral124_scaffold_1063_8
Clostridium sp. CAG:594, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12665..13312)
-----------------
DNA (648bp)
protein (216aa)
Putative membrane protein {ECO:0000313|EMBL:CDA79738.1}; TaxID=1262826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridi
DolZOral124_scaffold_1063_9
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13499..14440)
-----------------
DNA (942bp)
protein (314aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CH35_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:CDD77529.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococ
Transcriptional regulator
DolZOral124_scaffold_1063_10
Clostridiales bacterium S7-1-4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14437..15312)
-----------------
DNA (876bp)
protein (292aa)
methionine synthase (B12-dependent) (EC:2.1.1.13)
Homocysteine S-methyltransferase n=1 Tax=Eubacterium sp. AS15 RepID=J4TLM7_9FIRM
Homocysteine methyltransferase {ECO:0000313|EMBL:KGF06515.1}; TaxID=1284708 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales b
DolZOral124_scaffold_1063_11

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comp(15547..15813)
-----------------
DNA (267bp)
protein (89aa)
Uncharacterized protein {ECO:0000313|EMBL:KKO07855.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
DolZOral124_scaffold_1063_12
Bacteroides thetaiotaomicron, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15822..16538)
-----------------
DNA (717bp)
protein (239aa)
Uncharacterized protein n=4 Tax=Bacteroides RepID=Q8A7D9_BACTN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOS03319.1}; TaxID=1235785 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides thetaiotaomicron d
DolZOral124_scaffold_1063_13
unknown

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comp(16713..17813)
-----------------
DNA (1101bp)
protein (367aa)

This feature has no annotations

DolZOral124_scaffold_1063_14
Treponema phagedenis, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(18253..18462)
-----------------
DNA (210bp)
protein (70aa)
PAS domain S-box protein n=1 Tax=Treponema phagedenis F0421 RepID=E7NQL8_TREPH
PAS domain S-box protein {ECO:0000313|EMBL:EFW39106.1}; TaxID=754027 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema phagedenis F0421.;"
diguanylate cyclase
DolZOral124_scaffold_1063_15
Peptostreptococcus anaerobius CAG:621, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18572..19147)
-----------------
DNA (576bp)
protein (192aa)
ABC-type transport system, cobalt-specificATP-binding protein Tn1549-like, CTn2-Orf26 (EC:3.6.3.-)
ABC transporter, ATP-binding protein n=2 Tax=Peptostreptococcus RepID=D3MR39_9FIRM
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCY48573.1}; TaxID=1263100 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus; environme
DolZOral124_scaffold_1063_16
Streptococcus anginosus, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19181..20038)
-----------------
DNA (858bp)
protein (286aa)
ABC transporter, ATP-binding protein (EC:3.6.3.-)
ABC transporter, ATP-binding protein n=2 Tax=Streptococcus anginosus RepID=T2A1Q5_STRAP
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EID21780.1}; TaxID=1095729 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus anginosus grou
DolZOral124_scaffold_1063_17
Peptostreptococcus anaerobius, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20050..20742)
-----------------
DNA (693bp)
protein (231aa)
Cobalt transport protein n=2 Tax=Streptococcus anginosus RepID=T2A0E3_STRAP
cobalt transport protein
Cobalt transport protein {ECO:0000313|EMBL:EFD05399.1}; TaxID=596329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus.;" source="Peptostreptococcus a
DolZOral124_scaffold_1063_18
Peptostreptococcus anaerobius, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20747..21370)
-----------------
DNA (624bp)
protein (208aa)
membrane protein n=1 Tax=Anaerococcus obesiensis RepID=UPI0002FD2F47
Uncharacterized protein {ECO:0000313|EMBL:EFD05405.1}; TaxID=596329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus.;" source="Peptostreptococcus an
putative membrane proteinTn1549-like,CTn2-Orf24
DolZOral124_scaffold_1063_19
Eggerthia catenaformis, Eggerthia, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(21411..23153)
-----------------
DNA (1743bp)
protein (581aa)
Uncharacterized protein n=1 Tax=Eggerthia catenaformis OT 569 = DSM 20559 RepID=M2PMF3_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:EMD16744.1}; TaxID=999415 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Eggerthia.;" source="Eggerthia catenaformi
putative ABC transporter, ATP-binding/permease protein
DolZOral124_scaffold_1063_20
Eubacterium brachy, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23155..24867)
-----------------
DNA (1713bp)
protein (571aa)
ABC transporter, ATP-binding protein n=1 Tax=Eubacterium brachy ATCC 33089 RepID=V1CQQ1_9FIRM rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ESE31201.1}; TaxID=1321814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium brachy AT
ABC transporter ATP-binding protein
DolZOral124_scaffold_1063_21
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24994..25965)
-----------------
DNA (972bp)
protein (324aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=2 Tax=Clostridium difficile RepID=T3LDJ7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:ETU18007.1}; TaxID=1391480 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0410.;
AraC family transcriptional regulator
DolZOral124_scaffold_1063_22
unknown

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comp(25982..26371)
-----------------
DNA (390bp)
protein (130aa)

This feature has no annotations

DolZOral124_scaffold_1063_23
unknown

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comp(26397..26816)
-----------------
DNA (420bp)
protein (140aa)

This feature has no annotations

DolZOral124_scaffold_1063_24
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(26825..27466)
-----------------
DNA (642bp)
protein (214aa)
Hydrolase, alpha/beta fold family n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZGH7_9BACT
Hydrolase, alpha/beta fold family {ECO:0000313|EMBL:EAY30594.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC
hypothetical protein
DolZOral124_scaffold_1063_25
Streptococcus infantarius, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27606..29468)
-----------------
DNA (1863bp)
protein (621aa)
phrB; deoxyribodipyrimidine photo-lyase (EC:4.1.99.3)
FAD binding domain of DNA photolyase n=1 Tax=Streptococcus infantarius subsp. infantarius ATCC BAA-102 RepID=B1SGD4_9STRE
FAD binding domain of DNA photolyase {ECO:0000313|EMBL:EDT46747.1}; TaxID=471872 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus infan
DolZOral124_scaffold_1063_26
Porphyromonas macacae, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29478..30800)
-----------------
DNA (1323bp)
protein (441aa)
putative glucuronosyltransferase (EC:2.4.1.17)
Putative glucuronosyltransferase n=1 Tax=Capnocytophaga canimorsus (strain 5) RepID=F9YTD5_CAPCC
Uncharacterized protein {ECO:0000313|EMBL:KGN74349.1}; TaxID=28115 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas macacae.;"
DolZOral124_scaffold_1063_27
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30899..32050)
-----------------
DNA (1152bp)
protein (384aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5NX77_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ08820.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
DolZOral124_scaffold_1063_28
unknown

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comp(32272..32406)
-----------------
DNA (135bp)
protein (45aa)

This feature has no annotations

DolZOral124_scaffold_1063_29
[Eubacterium] sulci, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32532..33908)
-----------------
DNA (1377bp)
protein (459aa)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EUC78797.1}; EC=2.1.1.- {ECO:0000313|EMBL:EUC78797.1};; TaxID=888727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridial
Putative uncharacterized protein n=1 Tax=Eubacterium infirmum F0142 RepID=H1PMC1_9FIRM rbh
TrmA family RNA methyltransferase
DolZOral124_scaffold_1063_30
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34266..34835
-----------------
DNA (570bp)
protein (190aa)
Uncharacterized protein n=1 Tax=Finegoldia magna BVS033A4 RepID=E1L077_FINMA
Uncharacterized protein {ECO:0000313|EMBL:EFL53265.1}; TaxID=866773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna BVS033A4.;"
TetR/AcrR family transcriptional regulator
Displaying items 1-30 of 41 in total

View Taxonomy