ggKbase home page

DolZOral124_scaffold_1161

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_1161_1
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1..129)
-----------------
DNA (129bp)
protein (43aa)
Elongation factor Tu n=4 Tax=Clostridium bifermentans RepID=T4VSC1_CLOBI
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridial
tuf1; elongation factor Tu
DolZOral124_scaffold_1161_2
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

comp(161..2224)
-----------------
DNA (2064bp)
protein (688aa)
Elongation factor G n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6ERC4_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium
fusA; elongation factor G
DolZOral124_scaffold_1161_3
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists


comp(2270..2740)
-----------------
DNA (471bp)
protein (157aa)
30S ribosomal protein S7 n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E6A7_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
ribosomal protein S7
DolZOral124_scaffold_1161_4
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2857..3279)
-----------------
DNA (423bp)
protein (141aa)
30S ribosomal protein S12 n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=RS12_ALKMQ
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source=
rpsL; 30S ribosomal protein S12
DolZOral124_scaffold_1161_5
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3302..3628)
-----------------
DNA (327bp)
protein (109aa)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I5N4_CLOCE
50S ribosomal protein L7Ae/L30e/S12e/Gadd45
Ribosomal protein L7Ae/L30e/S12e/Gadd45 {ECO:0000313|EMBL:ACL74701.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium
DolZOral124_scaffold_1161_6
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3652..7179)
-----------------
DNA (3528bp)
protein (1176aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CS66_9CLOT
DolZOral124_scaffold_1161_7
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7221..10850)
-----------------
DNA (3630bp)
protein (1210aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=RPOB_ALKMQ
DolZOral124_scaffold_1161_8
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11278..11643)
-----------------
DNA (366bp)
protein (122aa)
50S ribosomal protein L7/L12 n=1 Tax=Clostridium sp. JC122 RepID=UPI0002899917
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense
rplL; 50S ribosomal protein L7/L12
DolZOral124_scaffold_1161_9
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11686..12198)
-----------------
DNA (513bp)
protein (171aa)
50S ribosomal protein L10 n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NC07_9FIRM
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environ
LSU ribosomal protein L10P
DolZOral124_scaffold_1161_10
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12348..13040)
-----------------
DNA (693bp)
protein (231aa)
50S ribosomal protein L1 n=2 Tax=Clostridiales RepID=B0A699_9FIRM
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azore
rplA; 50S ribosomal subunit protein L1
DolZOral124_scaffold_1161_11
Peptostreptococcaceae bacterium CM5, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13088..13513)
-----------------
DNA (426bp)
protein (142aa)
50S ribosomal protein L11 n=4 Tax=unclassified Eubacteriaceae RepID=G9X2B9_9FIRM
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=796940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium CM5
rplK; 50S ribosomal protein L11
DolZOral124_scaffold_1161_12
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

comp(13566..14090)
-----------------
DNA (525bp)
protein (175aa)
Transcription termination/antitermination protein NusG n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E6B6_9FIRM
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="F
NusG antitermination factor
DolZOral124_scaffold_1161_13
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14136..14342)
-----------------
DNA (207bp)
protein (69aa)
Protein translocase subunit SecE n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AWG5_9CLOT
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobact
Preprotein translocase subunit SecE
DolZOral124_scaffold_1161_14
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14395..14544)
-----------------
DNA (150bp)
protein (50aa)
50S ribosomal protein L33 n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PTY4_CLOSD
rpmGA; ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium stick
DolZOral124_scaffold_1161_15
Carnobacterium sp. WN1359, Carnobacterium, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14668..15996)
-----------------
DNA (1329bp)
protein (443aa)
aminopeptidase C n=1 Tax=Bavariicoccus seileri RepID=UPI0003B7701C
aminopeptidase C
Uncharacterized protein {ECO:0000313|EMBL:AGY82275.1}; TaxID=1266845 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium.;" source="Carnobacterium sp. WN1359.;"
DolZOral124_scaffold_1161_16
Thermoanaerobacterium aotearoense, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16015..16311)
-----------------
DNA (297bp)
protein (99aa)
Uncharacterized protein n=1 Tax=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) RepID=I3VUF1_THESW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETO37265.1}; TaxID=1421016 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerob
DolZOral124_scaffold_1161_17
unknown

Not on your lists

comp(16298..16444)
-----------------
DNA (147bp)
protein (49aa)

This feature has no annotations

DolZOral124_scaffold_1161_18
Anaerococcus prevotii, Anaerococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16441..16857)
-----------------
DNA (417bp)
protein (139aa)
MaoC domain protein dehydratase n=1 Tax=Anaerococcus prevotii (strain ATCC 9321 / DSM 20548 / JCM 6508 / PC1) RepID=C7RFA6_ANAPD
MaoC domain-containing protein dehydratase
MaoC domain protein dehydratase {ECO:0000313|EMBL:ACV28167.1}; TaxID=525919 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Anaerococcus.;" source="Anaerococcus prevotii (s
DolZOral124_scaffold_1161_19
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16883..17965)
-----------------
DNA (1083bp)
protein (361aa)
Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KXI6_9FIRM
Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit {ECO:0000313|EMBL:EFR33482.1}; TaxID=908338 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;"
poly(R)-hydroxyalkanoic acid synthase subunit PhaC
DolZOral124_scaffold_1161_20
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17993..19471)
-----------------
DNA (1479bp)
protein (493aa)
Poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KXI7_9FIRM
Poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit {ECO:0000313|EMBL:EFR33508.1}; TaxID=908338 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;"
hypothetical protein
DolZOral124_scaffold_1161_21
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19901..20494)
-----------------
DNA (594bp)
protein (198aa)
Transcriptional regulator, TetR family n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KP80_CLOPH
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABX41742.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (str
DolZOral124_scaffold_1161_22
unknown

Not on your lists

20599..20724
-----------------
DNA (126bp)
protein (42aa)

This feature has no annotations

DolZOral124_scaffold_1161_23
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20717..22663
-----------------
DNA (1947bp)
protein (649aa)
Heavy metal translocating P-type ATPase n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W5A2_9CLOT
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:EOQ39879.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus
heavy metal translocating P-type ATPase
DolZOral124_scaffold_1161_24
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22620..23681)
-----------------
DNA (1062bp)
protein (354aa)
ABC transporter, periplasmic spermidine putrescine-binding protein PotD n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CC92_9CLOT rbh
ABC transporter, periplasmic spermidine putrescine-binding protein PotD {ECO:0000313|EMBL:EOC99919.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisali
extracellular solute-binding protein
DolZOral124_scaffold_1161_25
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23695..24474)
-----------------
DNA (780bp)
protein (260aa)
Spermidine/putrescine transport system permease protein PotC n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AZ53_CLOA9
potC; spermidine/putrescine transport system permease protein PotC
Spermidine/putrescine transport system permease protein PotC {ECO:0000313|EMBL:AFS77970.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium
DolZOral124_scaffold_1161_26
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24471..25298)
-----------------
DNA (828bp)
protein (276aa)
Spermidine Putrescine ABC transporter permease component PotB n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ATG6_9CLOT
Spermidine Putrescine ABC transporter permease component PotB {ECO:0000313|EMBL:EOC99921.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;
potB; spermidine/putrescine ABC transporter
DolZOral124_scaffold_1161_27
Parvimonas sp. oral taxon 110, Parvimonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25291..26340)
-----------------
DNA (1050bp)
protein (350aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=767100 species="Bacteria; Firmicutes; Clostridia; Clostri
Polyamine ABC transporter, ATP-binding protein n=1 Tax=Parvimonas sp. oral taxon 393 str. F0440 RepID=F9PQZ3_9FIRM
spermidine/putrescine ABC transporter ATP-binding protein
DolZOral124_scaffold_1161_28
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26357..27397)
-----------------
DNA (1041bp)
protein (347aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GLQ8_EUBLK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO36682.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612
DolZOral124_scaffold_1161_29
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27408..28484)
-----------------
DNA (1077bp)
protein (359aa)
ugtP2; processive diacylglycerol glucosyltransferase UgtP (EC:2.4.1.-)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CL98_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOC99465.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimati
DolZOral124_scaffold_1161_30
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28619..29524)
-----------------
DNA (906bp)
protein (302aa)
Chemotaxis protein cheV (EC:2.7.3.-)
Chemotaxis protein cheV {ECO:0000313|EMBL:CBH21708.1}; EC=2.7.3.- {ECO:0000313|EMBL:CBH21708.1};; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclo
Chemotaxis protein cheV n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PS54_CLOSD
Displaying items 1-30 of 41 in total

View Taxonomy