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DolZOral124_scaffold_293

Search features with annotation key words

Displaying items 1-30 of 124 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_293_1
unknown

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1..120
-----------------
DNA (120bp)
protein (40aa)

This feature has no annotations

DolZOral124_scaffold_293_2
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(179..4666)
-----------------
DNA (4488bp)
protein (1496aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=1304284 species="Bacteria; Firmicu
DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III polC-type n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ATZ7_9CLOT
DolZOral124_scaffold_293_3
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4845..5918)
-----------------
DNA (1074bp)
protein (358aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS0
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=2 Tax=Clostridiales RepID=B0AB09_9FIRM
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
DolZOral124_scaffold_293_4
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5977..6984)
-----------------
DNA (1008bp)
protein (336aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoc
Putative membrane-associated protease n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PSG3_CLOSD
putative membrane-associated protease
DolZOral124_scaffold_293_5
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6981..8132)
-----------------
DNA (1152bp)
protein (384aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:00002
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=[Clostridium] glycolicum RepID=UPI000377410A
DolZOral124_scaffold_293_6
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8204..9001)
-----------------
DNA (798bp)
protein (266aa)
Phosphatidate cytidylyltransferase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TRL7_ALKMQ
phosphatidate cytidylyltransferase
Phosphatidate cytidylyltransferase {ECO:0000313|EMBL:ABR48835.1}; Flags: Precursor;; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alka
DolZOral124_scaffold_293_7
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9005..9709)
-----------------
DNA (705bp)
protein (235aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridi
Isoprenyl transferase n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LSP4_CLOB8 rbh
undecaprenyl diphosphate synthase
DolZOral124_scaffold_293_8
unknown

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comp(9854..10063)
-----------------
DNA (210bp)
protein (70aa)

This feature has no annotations

DolZOral124_scaffold_293_9
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10065..10622)
-----------------
DNA (558bp)
protein (186aa)
Ribosome-recycling factor n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PSG8_CLOSD
frr; ribosome-recycling factor Frr
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1286171 species="Bacteria;
DolZOral124_scaffold_293_10
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10633..11337)
-----------------
DNA (705bp)
protein (235aa)
Uridylate kinase {ECO:0000255|HAMAP-Rule:MF_01220}; Short=UK {ECO:0000255|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000255|HAMAP-Rule:MF_01220};; Uridine monophosphate kinase {ECO:0000255|HAMAP-Rule:MF
Uridylate kinase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=PYRH_ALKMQ rbh
pyrH; uridylate kinase
DolZOral124_scaffold_293_11
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11401..12051)
-----------------
DNA (651bp)
protein (217aa)
Elongation factor Ts n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AXN2_CLOA9 rbh
tsf; elongation factor Ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostrid
DolZOral124_scaffold_293_12
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12078..12818)
-----------------
DNA (741bp)
protein (247aa)
30S ribosomal protein S2 n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RIB4_9FIRM
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubact
SSU ribosomal protein S2P
DolZOral124_scaffold_293_13
unknown

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comp(13003..13602)
-----------------
DNA (600bp)
protein (200aa)

This feature has no annotations

DolZOral124_scaffold_293_14
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13607..13930)
-----------------
DNA (324bp)
protein (108aa)
Uncharacterized protein {ECO:0000313|EMBL:CCQ93040.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
DolZOral124_scaffold_293_15
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13950..15377)
-----------------
DNA (1428bp)
protein (476aa)
Putative uncharacterized protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TRM7_ALKMQ rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR48845.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (stra
DolZOral124_scaffold_293_16
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15408..16148)
-----------------
DNA (741bp)
protein (247aa)
RNA polymerase sigma-28 subunit FliA/WhiG (EC:4.1.1.65)
RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TRM8_ALKMQ
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens
DolZOral124_scaffold_293_17
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16184..16669)
-----------------
DNA (486bp)
protein (162aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TRM9_ALKMQ
chemoreceptor glutamine deamidase CheD
DolZOral124_scaffold_293_18
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16666..17283)
-----------------
DNA (618bp)
protein (206aa)
Chemotaxis protein CheC--inhibitor of MCP methylation n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CLZ3_9CLOT
Chemotaxis protein CheC--inhibitor of MCP methylation {ECO:0000313|EMBL:EOC99730.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source
CheC, inhibitor of MCP methylation
DolZOral124_scaffold_293_19
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17313..17753)
-----------------
DNA (441bp)
protein (147aa)
CheW protein n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S3A6_THEOJ
Chemotaxis protein CheW {ECO:0000313|EMBL:KGG80825.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis
chmotaxis protein CheW
DolZOral124_scaffold_293_20
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17769..19916)
-----------------
DNA (2148bp)
protein (716aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacte
CheA signal transduction histidine kinase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MHG2_ALKOO
CheA signal transduction histidine kinase
DolZOral124_scaffold_293_21
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19922..20989)
-----------------
DNA (1068bp)
protein (356aa)
response regulator receiver modulated CheB methylesterase (EC:3.1.1.61)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=350688 species="Bacteria; Firmicutes; Clostridia
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MHG1_ALKOO rbh
DolZOral124_scaffold_293_22
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21020..21883)
-----------------
DNA (864bp)
protein (288aa)
Site-determining protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MHF9_ALKOO
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
cobyrinic acid ac-diamide synthase
DolZOral124_scaffold_293_23
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

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comp(21886..23214)
-----------------
DNA (1329bp)
protein (443aa)
GTP-binding signal recognition particle SRP54 G-domain id=1958646 bin=GWB2_Clostridiales_37_7 species=Alkaliphilus oremlandii genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
GTP-binding signal recognition particle; K02404 flagellar biosynthesis protein FlhF Tax=GWB2_Clostridiales_37_7_curated
GTP-binding signal recognition particle
DolZOral124_scaffold_293_24
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23211..25247)
-----------------
DNA (2037bp)
protein (679aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TKX3_ALKMQ
flagellar biosynthesis protein FlhA
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:ABR46841.1}; Flags: Precursor;; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alk
DolZOral124_scaffold_293_25
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25264..26406)
-----------------
DNA (1143bp)
protein (381aa)
Flagellar biosynthesis protein FlhB n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ARD6_9CLOT
Flagellar biosynthesis protein FlhB {ECO:0000313|EMBL:EOC99722.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacte
flhB; flagellar biosynthetic protein FlhB
DolZOral124_scaffold_293_26
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26364..27128)
-----------------
DNA (765bp)
protein (255aa)
Flagellar biosynthetic protein fliR n=1 Tax=Clostridium sp. BNL1100 RepID=H2JES7_9CLOT
flagellar biosynthetic protein FliR
Flagellar biosynthetic protein fliR {ECO:0000256|RuleBase:RU003842}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL11
DolZOral124_scaffold_293_27
Bacillus sp. 1NLA3E, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(27170..27439)
-----------------
DNA (270bp)
protein (90aa)
Flagellar biosynthetic protein FliQ n=1 Tax=Bacillus sp. 1NLA3E RepID=U3GLU8_9BACI
flagellar biosynthetic protein FliQ
Flagellar biosynthetic protein FliQ {ECO:0000313|EMBL:AGK55362.1}; TaxID=666686 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. 1NLA3E.;"
DolZOral124_scaffold_293_28
Caldalkalibacillus thermarum, Caldalkalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(27476..28273)
-----------------
DNA (798bp)
protein (266aa)
flagellar biosynthesis protein FliP n=1 Tax=Marinococcus halotolerans RepID=UPI0003B313D9
Flagellar biosynthetic protein FliP {ECO:0000313|EMBL:EGL82511.1}; TaxID=986075 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Caldalkalibacillus.;" source="Caldalkalibacillus therma
flagellar biosynthetic protein FliP
DolZOral124_scaffold_293_29
unknown

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comp(28274..28621)
-----------------
DNA (348bp)
protein (116aa)

This feature has no annotations

DolZOral124_scaffold_293_30
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28637..28999)
-----------------
DNA (363bp)
protein (121aa)
Chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ARD1_9CLOT
Chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY {ECO:0000313|EMBL:EOC99717.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostrid
response regulator receiver protein
Displaying items 1-30 of 124 in total

View Taxonomy