ggKbase home page

DolZOral124_scaffold_895

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_895_1
unknown

Not on your lists

comp(558..932)
-----------------
DNA (375bp)
protein (125aa)

This feature has no annotations

DolZOral124_scaffold_895_2
unknown

Not on your lists

comp(1223..2170)
-----------------
DNA (948bp)
protein (316aa)
Uncharacterized protein n=1 Tax=Eimeria brunetti RepID=U6LV89_9EIME
DolZOral124_scaffold_895_3
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2245..3489)
-----------------
DNA (1245bp)
protein (415aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:161 RepID=R5KZZ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY70679.1}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium
hypothetical protein
DolZOral124_scaffold_895_4
Parvimonas micra, Parvimonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3709..4203)
-----------------
DNA (495bp)
protein (165aa)
Uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLU8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIZ36875.1}; TaxID=33033 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Parvimonas.;" source="Parvimonas micra.;"
DolZOral124_scaffold_895_5
Peptostreptococcaceae bacterium AS15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4321..5580
-----------------
DNA (1260bp)
protein (420aa)
OmpA family protein n=1 Tax=Eubacterium sp. AS15 RepID=J4TGS7_9FIRM
OmpA family protein {ECO:0000313|EMBL:EJP22404.1}; TaxID=936556 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium AS15.;"
porin
DolZOral124_scaffold_895_6
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5626..6567
-----------------
DNA (942bp)
protein (314aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding {ECO:0000313|EMBL:EMS69864.1}; EC=1.1.1.29 {ECO:0000313|EMBL:EMS69864.1};; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridia
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding n=1 Tax=Clostridium termitidis CT1112 RepID=S0FL20_9CLOT
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase
DolZOral124_scaffold_895_7
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6573..7676
-----------------
DNA (1104bp)
protein (368aa)
Glycerate kinase {ECO:0000313|EMBL:EDM50817.1}; EC=2.7.1.31 {ECO:0000313|EMBL:EDM50817.1};; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source
glycerate kinase (EC:2.7.1.31)
glycerate kinase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2C69C
DolZOral124_scaffold_895_8
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7769..8029
-----------------
DNA (261bp)
protein (87aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:274 RepID=R6PD29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC21415.1}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium
hypothetical protein
DolZOral124_scaffold_895_9
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

8029..8727
-----------------
DNA (699bp)
protein (233aa)
Aliphatic sulfonates import ATP-binding protein SsuB n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7KBJ7_9FIRM
Aliphatic sulfonates import ATP-binding protein SsuB {ECO:0000313|EMBL:CDE73098.1}; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; en
ABC transporter
DolZOral124_scaffold_895_10
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8724..9761
-----------------
DNA (1038bp)
protein (346aa)
Sulfonate/nitrate ABC transport system, substrate-binding protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AXE8_CLOA9
Taurine ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJF26962.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridiu
sulfonate/nitrate ABC transporter substrate-binding protein
DolZOral124_scaffold_895_11
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9733..10485
-----------------
DNA (753bp)
protein (251aa)
Sulfonate/nitrate ABC transporter, permease protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AUD0_CLOA9
ABC transporter permease {ECO:0000313|EMBL:KJF26961.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
sulfonate/nitrate ABC transporter permease
DolZOral124_scaffold_895_12
Anaerococcus prevotii, Anaerococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10628..10816
-----------------
DNA (189bp)
protein (63aa)
30S ribosomal protein S21 n=1 Tax=Anaerococcus prevotii ACS-065-V-Col13 RepID=F0GWQ3_9FIRM
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=879305 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Anaerococcus.;" sou
30S ribosomal protein S21
DolZOral124_scaffold_895_13
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10825..11271
-----------------
DNA (447bp)
protein (149aa)
Transamidase GatB domain protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CER5_9CLOT
Aspartyl-tRNA amidotransferase {ECO:0000313|EMBL:KGG81363.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azo
GatB/YqeY domain-containing protein
DolZOral124_scaffold_895_14
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11315..12265
-----------------
DNA (951bp)
protein (317aa)
PhoH family protein n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U533_ETHHY
PhoH family protein
PhoH family protein {ECO:0000313|EMBL:ADU26739.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain D
DolZOral124_scaffold_895_15
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12265..12711
-----------------
DNA (447bp)
protein (149aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=908338 species="Bacteria; Fi
Endoribonuclease YbeY n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4L094_9FIRM
hypothetical protein
DolZOral124_scaffold_895_16
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12708..13775
-----------------
DNA (1068bp)
protein (356aa)
Uncharacterized protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MG68_ALKOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW18796.1}; Flags: Precursor;; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus or
DolZOral124_scaffold_895_17
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13768..14160
-----------------
DNA (393bp)
protein (131aa)
Cytidine deaminase {ECO:0000313|EMBL:CCQ97376.1}; EC=3.5.4.5 {ECO:0000313|EMBL:CCQ97376.1};; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sour
cdd; cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase n=1 Tax=Clostridium ultunense Esp RepID=M1ZF85_9CLOT
DolZOral124_scaffold_895_18
Listeria fleischmannii, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14153..15025
-----------------
DNA (873bp)
protein (291aa)
GTPase Era n=1 Tax=Listeria fleischmannii subsp. coloradonensis RepID=H7F7S1_9LIST
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1265822 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria fleischmannii
GTP-binding protein Era
DolZOral124_scaffold_895_19
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15018..15701
-----------------
DNA (684bp)
protein (228aa)
DNA repair protein RecO n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=RECO_ALKOO
DNA repair protein RecO
DNA repair protein RecO {ECO:0000255|HAMAP-Rule:MF_00201}; Recombination protein O {ECO:0000255|HAMAP-Rule:MF_00201}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiac
DolZOral124_scaffold_895_20
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15711..16217
-----------------
DNA (507bp)
protein (169aa)
Ubiquitin-associated-domain-containing protein n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PSN8_CLOSD
Ubiquitin-associated-domain-containing protein
Ubiquitin-associated-domain-containing protein {ECO:0000313|EMBL:CBH21892.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="
DolZOral124_scaffold_895_21
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16189..17598
-----------------
DNA (1410bp)
protein (470aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:000025
glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase n=7 Tax=Clostridium thermocellum RepID=SYG_CLOTH
DolZOral124_scaffold_895_22
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17602..18396
-----------------
DNA (795bp)
protein (265aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B163_CLOA9
hypothetical protein
DolZOral124_scaffold_895_23
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

18449..19456
-----------------
DNA (1008bp)
protein (336aa)
Deoxyguanosinetriphosphate triphosphohydrolase n=1 Tax=Caldanaerobacter subterraneus subsp. yonseiensis KB-1 RepID=U5CZ07_THEYO
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae;
Dgt; deoxyguanosinetriphosphate triphosphohydrolase-like protein
DolZOral124_scaffold_895_24
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19459..21180
-----------------
DNA (1722bp)
protein (574aa)
dnaG; DNA primase DnaG (EC:2.7.7.-)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1128398 species="Bacteria; Firmicutes;
DNA primase n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B2G6_CLOA9
DolZOral124_scaffold_895_25
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

21183..22286
-----------------
DNA (1104bp)
protein (368aa)
RNA polymerase sigma factor SigA n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3AEW8_CARHZ
rpoD; RNA polymerase sigma factor RpoD
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source=
DolZOral124_scaffold_895_26
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22286..22912
-----------------
DNA (627bp)
protein (209aa)
tRNA (Adenine(22)-N(1))-methyltransferase TrmK {ECO:0000313|EMBL:KDR95146.1}; EC=2.1.1.217 {ECO:0000313|EMBL:KDR95146.1};; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pepto
Putative tRNA-m1A22 methylase n=1 Tax=Caloramator australicus RC3 RepID=I7LGA1_9CLOT
hypothetical protein
DolZOral124_scaffold_895_27
unknown

Not on your lists

23244..23675
-----------------
DNA (432bp)
protein (144aa)

This feature has no annotations

DolZOral124_scaffold_895_28
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

24040..25332
-----------------
DNA (1293bp)
protein (431aa)
Extracellular solute-binding protein family 1 id=1702368 bin=GWB2_Clostridiales_37_7 species=Haloplasma contractile genus=Haloplasma taxon_order=Haloplasmatales taxon_class=unknown phylum=unknown tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
extracellular solute-binding protein family 1; K02027 multiple sugar transport system substrate-binding protein Tax=GWB2_Clostridiales_37_7_curated
family 1 extracellular solute-binding protein
DolZOral124_scaffold_895_29
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

25393..26646
-----------------
DNA (1254bp)
protein (418aa)
Sugar ABC transporter permease id=1702369 bin=GWB2_Clostridiales_37_7 species=Haloplasma contractile genus=Haloplasma taxon_order=Haloplasmatales taxon_class=unknown phylum=unknown tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good + rbh
ABC transporter integral membrane protein; K02025 multiple sugar transport system permease protein Tax=GWB2_Clostridiales_37_7_curated
binding-protein-dependent transport system inner membrane protein
DolZOral124_scaffold_895_30
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

26648..27478
-----------------
DNA (831bp)
protein (277aa)
ABC transporter permease id=1702370 bin=GWB2_Clostridiales_37_7 species=Haloplasma contractile genus=Haloplasma taxon_order=Haloplasmatales taxon_class=unknown phylum=unknown tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good + rbh
ABC transporter integral membrane protein; K02026 multiple sugar transport system permease protein Tax=GWB2_Clostridiales_37_7_curated
ABC transporter integral membrane protein
Displaying items 1-30 of 52 in total

View Taxonomy