ggKbase home page

DolZOral124_scaffold_967

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_967_1
Spirochaeta sp. JC230, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists


comp(3..584)
-----------------
DNA (582bp)
protein (194aa)
30S ribosomal protein S2 n=1 Tax=Treponema sp. JC4 RepID=I0X7D1_9SPIO
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1480694 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC230.;"
SSU ribosomal protein S2p (SAe)
DolZOral124_scaffold_967_2
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(699..1295)
-----------------
DNA (597bp)
protein (199aa)
Maf-like protein MSI_19680 n=1 Tax=Treponema sp. JC4 RepID=I0X7D2_9SPIO
maf protein; K06287 septum formation protein Tax=RBG_16_Spirochaete_67_19_curated
septum formation protein Maf
DolZOral124_scaffold_967_3
Treponema lecithinolyticum, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

1405..1938
-----------------
DNA (534bp)
protein (178aa)
TIGR03546 family protein n=1 Tax=Treponema lecithinolyticum ATCC 700332 RepID=U2K558_TRELE
TIGR03546 family protein {ECO:0000313|EMBL:ERJ93621.1}; TaxID=1321815 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema lecithinolyticum ATCC 700332.;"
hypothetical protein
DolZOral124_scaffold_967_4
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

1938..3914
-----------------
DNA (1977bp)
protein (659aa)
hypothetical protein n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI0003776EE6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADK80046.1}; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 /
DolZOral124_scaffold_967_5
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

4078..6423
-----------------
DNA (2346bp)
protein (782aa)
polysaccharide deacetylase Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
Polysaccharide deacetylase id=3811560 bin=GWF2_Lentisphaerae_49_21 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
DolZOral124_scaffold_967_6
RBG_16_Spirochaetes_49_21_curated, Spirochaetes, Bacteria

Not on your lists

comp(6420..7472)
-----------------
DNA (1053bp)
protein (351aa)
DNA polymerase IV (EC:2.7.7.7)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI00037A0EA6
DNA polymerase IV Tax=RBG_16_Spirochaetes_49_21_curated
DolZOral124_scaffold_967_7
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7669..11454
-----------------
DNA (3786bp)
protein (1262aa)
ATP-dependent helicase n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LSZ0_SYNAS
ATP-dependent helicase
ATP-dependent helicase {ECO:0000313|EMBL:ABC77196.1}; TaxID=56780 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrop
DolZOral124_scaffold_967_8
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11466..13205
-----------------
DNA (1740bp)
protein (580aa)
Protease 4 {ECO:0000256|PIRNR:PIRNR001217}; EC=3.4.21.- {ECO:0000256|PIRNR:PIRNR001217};; Endopeptidase IV {ECO:0000256|PIRNR:PIRNR001217}; Protease IV {ECO:0000256|PIRNR:PIRNR001217}; Signal peptide
endopeptidase IV n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E9C9E8
signal peptide peptidase SppA, 67K type
DolZOral124_scaffold_967_trna_1
unknown

Not on your lists

comp(13203..13276)
-----------------
DNA (74bp)
transferRNA
DolZOral124_scaffold_967_9
Mesorhizobium sp. LNJC405B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13326..14432)
-----------------
DNA (1107bp)
protein (369aa)
Fe(3+) ions import ATP-binding protein FbpC {ECO:0000256|HAMAP-Rule:MF_01706}; EC=3.6.3.30 {ECO:0000256|HAMAP-Rule:MF_01706};; TaxID=1287281 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhi
UPI0003CEF68D related cluster n=1 Tax=unknown RepID=UPI0003CEF68D
ABC transporter
DolZOral124_scaffold_967_10
Sphaerochaeta pleomorpha, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(14437..16110)
-----------------
DNA (1674bp)
protein (558aa)
ABC-type Fe3+ transport system, permease component n=1 Tax=Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) RepID=G8QYF4_SPHPG
ABC transporter inner membrane protein
ABC-type Fe3+ transport system, permease component {ECO:0000313|EMBL:AEV30801.1}; TaxID=158190 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta
DolZOral124_scaffold_967_11
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(16107..17147)
-----------------
DNA (1041bp)
protein (347aa)
thiamine ABC transporter substrate-binding protein n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI00036BF5D1
thiamine ABC transporter periplasmic protein
ABC transporter, periplasmic binding protein, thiB subfamily {ECO:0000313|EMBL:ADK80822.1}; Flags: Precursor;; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaet
DolZOral124_scaffold_967_12
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

17484..19229
-----------------
DNA (1746bp)
protein (582aa)
flavocytochrome C (EC:1.3.99.1)
Flavocytochrome c {ECO:0000313|EMBL:ADK82695.1}; EC=1.3.99.1 {ECO:0000313|EMBL:ADK82695.1};; Flags: Precursor;; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochae
Flavocytochrome c n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1R7J0_SPISS
DolZOral124_scaffold_967_13
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(19336..19983)
-----------------
DNA (648bp)
protein (216aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1329640 species="Bacteria; Spirochaetes; Spiro
Thymidylate kinase id=2538915 bin=GWB1_Spirochaetales_60_80 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes
thymidylate kinase
DolZOral124_scaffold_967_14
unknown

Not on your lists

20040..21611
-----------------
DNA (1572bp)
protein (524aa)

This feature has no annotations

DolZOral124_scaffold_967_15
RBG_13_Spirochaetes_68_11_curated, Spirochaetes, Bacteria

Not on your lists

21608..22252
-----------------
DNA (645bp)
protein (215aa)
Putative biopolymer transport protein ExbB-like n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SZA5_META2
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB Tax=RBG_13_Spirochaetes_68_11_curated
biopolymer transport protein ExbB-like
DolZOral124_scaffold_967_16
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

22215..22628
-----------------
DNA (414bp)
protein (138aa)
biopolymer transporter ExbD n=1 Tax=Algicola sagamiensis RepID=UPI00037782BA
Uncharacterized protein {ECO:0000313|EMBL:KGM44384.1}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
Biopolymer transport protein ExbD/TolR
DolZOral124_scaffold_967_17
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

22625..23365
-----------------
DNA (741bp)
protein (247aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM44385.1}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
DolZOral124_scaffold_967_18
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

23362..27645
-----------------
DNA (4284bp)
protein (1428aa)
Uncharacterized protein n=1 Tax=Spirochaeta sp. L21-RPul-D2 RepID=V5WHB6_9SPIO
Uncharacterized protein {ECO:0000313|EMBL:KGM44386.1}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
hypothetical protein
DolZOral124_scaffold_967_19
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

27663..30164
-----------------
DNA (2502bp)
protein (834aa)
Outer membrane protein assembly complex, YaeT protein n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8F2U9_SPICH
Uncharacterized protein {ECO:0000313|EMBL:KGM44387.1}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
outer membrane protein assembly complex, YaeT protein
DolZOral124_scaffold_967_20
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

30174..30701
-----------------
DNA (528bp)
protein (176aa)
Outer membrane chaperone Skp (OmpH) n=1 Tax=Spirochaeta thermophila (strain ATCC 700085 / DSM 6578 / Z-1203) RepID=G0GE73_SPITZ
Uncharacterized protein {ECO:0000313|EMBL:KGM44388.1}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
outer membrane chaperone Skp
DolZOral124_scaffold_967_21
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

30744..33293
-----------------
DNA (2550bp)
protein (850aa)
DNA mismatch repair protein MutS n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1R1K5_SPISS
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source
DNA mismatch repair protein MutS
DolZOral124_scaffold_967_22
Treponema phagedenis, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

33576..33992
-----------------
DNA (417bp)
protein (139aa)
Uncharacterized protein n=1 Tax=Treponema phagedenis F0421 RepID=E7NS34_TREPH
ComF-like protein {ECO:0000313|EMBL:CEM62961.1}; TaxID=162 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema phagedenis.;"
comF family protein
DolZOral124_scaffold_967_23
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

34125..34550
-----------------
DNA (426bp)
protein (142aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM44390.1}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
Ribosome maturation factor RimP id=2649714 bin=GWB1_Spirochaetes_59_5 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
hypothetical protein
DolZOral124_scaffold_967_24
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

34575..36080
-----------------
DNA (1506bp)
protein (502aa)
transcription elongation factor NusA n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI00035F242C rbh
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spiroch
transcription termination factor NusA
DolZOral124_scaffold_967_25
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

36087..38834
-----------------
DNA (2748bp)
protein (916aa)
Translation initiation factor IF-2 n=1 Tax=Spirochaeta africana (strain ATCC 700263 / DSM 8902 / Z-7692) RepID=H9UJA6_SPIAZ rbh
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" sour
translation initiation factor IF-2 rbh
DolZOral124_scaffold_967_26
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

38831..39178
-----------------
DNA (348bp)
protein (116aa)
Ribosome-binding factor A n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1R1L0_SPISS
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spiro
ribosome-binding factor A
DolZOral124_scaffold_967_27
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

39232..40107
-----------------
DNA (876bp)
protein (292aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylat
tRNA pseudouridine synthase B (EC:5.4.99.-)
hypothetical protein n=1 Tax=Spirochaeta alkalica RepID=UPI00036007AC
DolZOral124_scaffold_967_28
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists


40352..40621
-----------------
DNA (270bp)
protein (90aa)
30S ribosomal protein S15 n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1R1L3_SPISS
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spiro
30S ribosomal protein S15
DolZOral124_scaffold_967_29
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

40631..42790
-----------------
DNA (2160bp)
protein (720aa)
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=573413
polynucleotide phosphorylase n=1 Tax=Treponema primitia RepID=UPI0002555221
Displaying items 1-30 of 34 in total

View Taxonomy