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rifcsphigho2_01_scaffold_60135_4

Organism: RIFCSPHIGHO2_01_FULL_Archaea_Woesearchaeota_48_23

near complete RP 33 / 55 MC: 6 BSCG 6 / 51 MC: 1 ASCG 32 / 38
Location: comp(1662..2435)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA n=1 Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GS52_SELRL similarity UNIREF
DB: UNIREF100
  • Identity: 32.9
  • Coverage: 167.0
  • Bit_score: 79
  • Evalue 5.50e-12
RpoD subfamily RNA polymerase sigma-70 subunit similarity KEGG
DB: KEGG
  • Identity: 32.4
  • Coverage: 176.0
  • Bit_score: 80
  • Evalue 9.20e-13
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=927704 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas rumi similarity UNIPROT
DB: UniProtKB
  • Identity: 32.9
  • Coverage: 167.0
  • Bit_score: 79
  • Evalue 7.80e-12

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Taxonomy

Selenomonas ruminantium → Selenomonas → Selenomonadales → Negativicutes → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 774
ATGACGGCGACCCCTTCGCAACTCTCCTCGCCTTCGGCTCGTCGGCACGTTGCACTCTCGCTAACGCTCGGCTCACTTAACAGGAATTTTACGGCTCACTGCGTTGCACTTGTTCGCCCAAATTCGATTTTTCCAGCTCTGATTTCAGCTCTATCGGATTTTCCAGCTCTGTTCGCTCCGCTCACGAGGGAAAATCCTCACGAGGAAATCGAGGGAAAAATCGAACTTCGTAAAATTCCATACGTTATCCACATTTCTGAGCACCGGCAATATGATCAGCGCTGCTTAGAACGGATCAGGCGGTGTTTAGAGCAGCAGTTAGGCCGATCTCCGGAGATGGAAGAGATTGCTGCGGCCATGGACATCAGCCTCCAACAACTACGAAACATTTACGAACTCCCCCAGCAACCCCTGTCGCTTGATGTTACCGGCAGGTGGGAGGACGGGCCAGGCGAACCGTTAGAACAGGTGGTTTCAGCAAGAGCCCTGGACGGCTCAACTCCCAAAAGTGTAGAAGATACTATCGTCGAGACTCTGGATCGAAAGAAAATCCGCGTTCTTCTGGATCATCTGGTTTGCCAAAAAAAAGTAAAGCCCCGGGACAAACAGATCTTCTCCCGCTATAATGGCCTGCGGGGCCCGAAAGAGGAGACGTTTAAAAGCCTGGGAATAGAATTTGGGCTCACCCGCGAAGGAATCCGGCAAATTAATAAAAAAGTTTTGGGGCGATTACGGGAATGCGTGAACGGGAATCCCGAAGAAGAGAAAAGATGA
PROTEIN sequence
Length: 258
MTATPSQLSSPSARRHVALSLTLGSLNRNFTAHCVALVRPNSIFPALISALSDFPALFAPLTRENPHEEIEGKIELRKIPYVIHISEHRQYDQRCLERIRRCLEQQLGRSPEMEEIAAAMDISLQQLRNIYELPQQPLSLDVTGRWEDGPGEPLEQVVSARALDGSTPKSVEDTIVETLDRKKIRVLLDHLVCQKKVKPRDKQIFSRYNGLRGPKEETFKSLGIEFGLTREGIRQINKKVLGRLRECVNGNPEEEKR*