ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

rifcsplowo2_01_scaffold_60645_8

Organism: RIFCSPLOWO2_01_FULL_Archaea_Woesearchaeota_50_16

partial RP 33 / 55 MC: 5 BSCG 6 / 51 ASCG 26 / 38
Location: comp(5355..5897)

Top 3 Functional Annotations

Value Algorithm Source
Marine sediment metagenome DNA, contig: S01H1_S34811 {ECO:0000313|EMBL:GAG34603.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin similarity UNIPROT
DB: UniProtKB
  • Identity: 61.3
  • Coverage: 163.0
  • Bit_score: 192
  • Evalue 4.40e-46
hypothetical protein id=5049192 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b similarity UNIREF
DB: UNIREF100
  • Identity: 49.2
  • Coverage: 177.0
  • Bit_score: 167
  • Evalue 1.40e-38
putative transcription regulator, containing CBS protein similarity KEGG
DB: KEGG
  • Identity: 41.3
  • Coverage: 179.0
  • Bit_score: 136
  • Evalue 9.90e-30

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

marine sediment metagenome

Sequences

DNA sequence
Length: 543
ATGATTGACAAACTGCACGAGATCAAGGAGATGCGGAAGAAGCTCGGCTGGACGCAGGCCGAACTGGCCCGGCAGGCAGCTGTCTCGCAGTCGCTCATCGCGAAGATCGAGGCCGGCCGTATCGACCCGACGTACACCAAAGTCCAGAAAATATTTGATGCATTGAACCGGGCCGGCAGGAAAAAGGACCTTTTGGCCAGGGATATCATGAATCCAAAGCTTGTATCCGTCATACCCGGTACGGGCATTTCCGAAGCCATAAAAAAAATGCGCAAGCTGGGCATCTCCCAGATGCCGGTGCTCAGGGCCCACCAGTCCATCGGCACGGTTTCGGAAGCGGGCATCCTGGAGGCGCTCCTGCACAAGAAAGCCGACAAGGTGGAAGAAATTATGGAAGACGCTTCCCCGGTCGTGCCGCATACGGCTTCTGTTTCAGTGGTGCAGCATCTCCTCCAGTTCTTCCCGATCGTGCTGGTTTCCGAAGACGGCCATCTGAAGGGAGTCATCACCAAAAGCGATGTCCTGGCGAAGATGTACAAATGA
PROTEIN sequence
Length: 181
MIDKLHEIKEMRKKLGWTQAELARQAAVSQSLIAKIEAGRIDPTYTKVQKIFDALNRAGRKKDLLARDIMNPKLVSVIPGTGISEAIKKMRKLGISQMPVLRAHQSIGTVSEAGILEALLHKKADKVEEIMEDASPVVPHTASVSVVQHLLQFFPIVLVSEDGHLKGVITKSDVLAKMYK*