ggKbase home page

rifcsplowo2_01_scaffold_36930_9

Organism: RIFCSPLOWO2_01_FULL_Pacearchaeota_32_14

partial RP 27 / 55 MC: 6 BSCG 15 / 51 ASCG 23 / 38 MC: 2
Location: 3308..4006

Top 3 Functional Annotations

Value Algorithm Source
rpoD; DNA-directed RNA polymerase subunit D (EC:2.7.7.6); K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=CG_Pacearch_06 similarity UNIPROT
DB: UniProtKB
  • Identity: 61.4
  • Coverage: 233.0
  • Bit_score: 285
  • Evalue 8.40e-74
DNA-directed RNA polymerase subunit D n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I735_METCZ id=5103687 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome similarity UNIREF
DB: UNIREF100
  • Identity: 35.2
  • Coverage: 253.0
  • Bit_score: 126
  • Evalue 4.70e-26
DNA-directed RNA polymerase subunit D similarity KEGG
DB: KEGG
  • Identity: 35.2
  • Coverage: 253.0
  • Bit_score: 126
  • Evalue 1.30e-26

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

CG_Pacearch_06 → Pacearchaeota → Archaea

Sequences

DNA sequence
Length: 699
ATGGAAACAATAAAAAACACACCTGAAAAAATCGTTTTAAAAGTGCCTGCAAATGAATCACTAGCAAATGCTATAAGGCGATCTGTTTCAGAAGTTCCATCTTTGGCAATAGTAGAAGTTGAAATATTTAAAAACGATTCTGCTTTATACGACGAAGTCTTAGCTCATAGACTTGGTCTAGTTCCTCTAAAGACGGAAAAATCAATGGATGAAAAGACAAAGATTGATTTAAAGCTCACAAAATTAGGGCCTGGCACAGTTTATTCAGGTGACTTAAAAGGTTCAGCAGATATTGTCTTCGATAAAATTCCATTAACAATTTTAGGAGAAGGCGGTAAAATAGAACTTATTGCCACAGCACAATTAGGTACAGGACTAACACACGCAAAGCATATTCCAGGACTTTGTTATTACAGAAACGTTTTGGAAGTTAAATCAAGTCCGCAAATAGATAAGATTGTAACAAATTCAAGCTTTTCACAGATCAAAGCCGAAAAGAAAGGATCAAAATGGACTTGTGATTTAAATGAAGCTGAAATAGACGAAATCACTTTGATTGATAAAACAGCCGTTATAGATACAAACGAATTGATACTAATTGTAGAATCTTATGGTAATATGCCTGCAAAAGATATTCTTTTGGGAGCCGTAGAAGTCTTAGGTTCTAATCTTGAAGAAGTTGAAAAAGCTTTCAAATAA
PROTEIN sequence
Length: 233
METIKNTPEKIVLKVPANESLANAIRRSVSEVPSLAIVEVEIFKNDSALYDEVLAHRLGLVPLKTEKSMDEKTKIDLKLTKLGPGTVYSGDLKGSADIVFDKIPLTILGEGGKIELIATAQLGTGLTHAKHIPGLCYYRNVLEVKSSPQIDKIVTNSSFSQIKAEKKGSKWTCDLNEAEIDEITLIDKTAVIDTNELILIVESYGNMPAKDILLGAVEVLGSNLEEVEKAFK*