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rifcsphigho2_02_scaffold_8129_1

Organism: RIFCSPHIGHO2_02_FULL_Archaea_Woesearchaeota_33_21

near complete RP 32 / 55 MC: 2 BSCG 15 / 51 MC: 1 ASCG 37 / 38 MC: 1
Location: comp(128..1315)

Top 3 Functional Annotations

Value Algorithm Source
truD; tRNA pseudouridine synthase D (EC:5.4.99.12); K06176 tRNA pseudouridine13 synthase [EC:5.4.99.27] Tax=RBG_13_Euryarchaeota_31_8_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 50.3
  • Coverage: 396.0
  • Bit_score: 387
  • Evalue 2.70e-104
truD; tRNA pseudouridine synthase D (EC:5.4.99.12) similarity KEGG
DB: KEGG
  • Identity: 40.9
  • Coverage: 396.0
  • Bit_score: 277
  • Evalue 4.60e-72
Probable tRNA pseudouridine synthase D 2 n=1 Tax=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) RepID=TRUD2_METJA similarity UNIREF
DB: UNIREF100
  • Identity: 40.9
  • Coverage: 396.0
  • Bit_score: 277
  • Evalue 1.60e-71

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Taxonomy

RBG_13_Euryarchaeota_31_8_curated → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 1188
ATGAAACTTCGACAAAAACCAGAAGACTTCAAGGTAGAAGAAATAAATCAATTCAAATTATTAGCTAGCGGCAGCTACAAACTATATATTCTTGAGAAGAAAAGCGTTGAAACATTTGGGTTGTTAAACGACCTTTCAGCCCAAAACAAAATCCCTGTTCATGAGTTTGGCATTGCAGGATTAAAAGATAAGCATGCTGTTACTAAACAGTATTTTACAATTCCCTCAAAATATACTCTTAACCCGCTTAAAGAACAAGACTTCAGGCTGATTTTTCTTGGTTATGTCGACAAAAAACTTGAGCTTGGTGATTTGCAAAGCAATAGATTTGAGATTGTTGTCAGAGATATAAAAAAGGGCGAGACAGATAGCGTGATACAGAAAGCGCAGACAATAACAGAAATATGTGCTCCAAATTATTTTGACTCGCAAAGATTTGGCAGTGTCATTGACAAAGAATTTATTGCGAAATATCTAGTTAAAAAAAATTATGAGCGCGCTGTCAAACATTTTCTGACGAAATCCACTGCTTTCGAACCTAGAAAATTTAAGGAAGAAAAAAATAAACTGCTTGCAAACTGGAATAATCTTTCTAATCTATCTTTAACTCAGCTTAATATAACAAACAGAACACCATATGCAATACTTGAAGAATACAAAAGAACAAAAAACTGGCTAAGCGCATATAAAAAAATTCCTGCAAATTTAAGAGAAATGTTTATCAGCGCTTATCAAAGCTATTTATGGAATGAGTGTGTGAAAGAAATTCTGCGGAAAACAGTTAACAATAAGTCCCTTTATTCTGTCCCTTATAATATTGGATCACTATTATTTTATAAAAAACTATCAGCAGGCGAGATGAAACTCATTCCTAACTCAATAAAAACAATCAGCGACGAGCTGGATATAAACAAATTATCCCCTCTGGAAAAATACGCAATAGAGAAGGTTTTGGCAAAAGAAGGCATAACTTTAAAAGATTTCAACATCAAGCAAGAAACAGGCAATTTCTTCAAGACAAGTGACAGAGCTGTTTTATTAAAGCCAGAACATTTCAGCATTTCCAAACCGCTTGTAGACGAATTAAACACCAAAGGAAGCATGCAAAGGTACAAATTTATACTAAACTTCTCTCTTCCAAAAGGAAAATACGCAACAATAATTACTAAAAGATTGTTTAATCAATGA
PROTEIN sequence
Length: 396
MKLRQKPEDFKVEEINQFKLLASGSYKLYILEKKSVETFGLLNDLSAQNKIPVHEFGIAGLKDKHAVTKQYFTIPSKYTLNPLKEQDFRLIFLGYVDKKLELGDLQSNRFEIVVRDIKKGETDSVIQKAQTITEICAPNYFDSQRFGSVIDKEFIAKYLVKKNYERAVKHFLTKSTAFEPRKFKEEKNKLLANWNNLSNLSLTQLNITNRTPYAILEEYKRTKNWLSAYKKIPANLREMFISAYQSYLWNECVKEILRKTVNNKSLYSVPYNIGSLLFYKKLSAGEMKLIPNSIKTISDELDINKLSPLEKYAIEKVLAKEGITLKDFNIKQETGNFFKTSDRAVLLKPEHFSISKPLVDELNTKGSMQRYKFILNFSLPKGKYATIITKRLFNQ*