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S_p1_S3_coassembly_k141_560915

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_560915_trna_2
unknown

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comp(5..110)
DNA (106bp)
transferRNA Leu
S_p1_S3_coassembly_k141_560915_1

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comp(310..537)
DNA (228bp) protein (76aa)
Like-Sm ribonucleoprotein core Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EEN0_9EURY bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Like-Sm ribonucleoprotein core
Like-Sm ribonucleoprotein core {ECO:0000313|EMBL:AJF62365.1}; species="Archaea.;" source="archaeon GW2011_AR20.;"
S_p1_S3_coassembly_k141_560915_2

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667..1047
DNA (381bp) protein (127aa)
30S ribosomal protein S8e Tax=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) RepID=RS8E_PICTO bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S8e
30S ribosomal protein S8e {ECO:0000256|HAMAP-Rule:MF_00029, ECO:0000256|SAAS:SAAS00018121}; species="Archaea.;" source="archaeon GW2011_AR20.;"
S_p1_S3_coassembly_k141_560915_3

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1161..2078
DNA (918bp) protein (306aa)
Transcription initiation factor IIB Tax=Archaeoglobaceae RepID=TF2B_ARCFU bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Transcription initiation factor IIB
Transcription initiation factor IIB {ECO:0000256|HAMAP-Rule:MF_00383}; Short=TFIIB {ECO:0000256|HAMAP-Rule:MF_00383};; species="Archaea.;" source="archaeon GW2011_AR20.;"
S_p1_S3_coassembly_k141_560915_4
AR6, Pacearchaeaota, DPANN, Archaea

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2080..2856
DNA (777bp) protein (259aa)
hypothetical protein
id=5103198 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR6
S_p1_S3_coassembly_k141_560915_5
unknown

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2901..3722
DNA (822bp) protein (274aa)

This feature has no annotations

S_p1_S3_coassembly_k141_560915_6
CG_Pacearch_04, Pacearchaeota, Archaea

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comp(3712..4602)
DNA (891bp) protein (297aa)
rnz; ribonuclease Z Rnz (EC:3.1.26.11); K00784 ribonuclease Z [EC:3.1.26.11] bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
RNAse Z
Tax=CG_Pacearch_04
S_p1_S3_coassembly_k141_560915_7
AR20, Woesearchaeaota, DPANN, Archaea

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4655..5215
DNA (561bp) protein (187aa)
tRNA-intron endonuclease Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EE73_9EURY bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
tRNA-intron endonuclease
Tax=AR20
S_p1_S3_coassembly_k141_560915_8
unknown

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5232..5897
DNA (666bp) protein (222aa)

This feature has no annotations

S_p1_S3_coassembly_k141_560915_9
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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5944..6825
DNA (882bp) protein (294aa)
Putative uncharacterized protein bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
Tax=RBG_13_Woesearchaeota_36_6_curated
S_p1_S3_coassembly_k141_560915_10
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(6802..7488)
DNA (687bp) protein (229aa)
Uncharacterized protein Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GWG2_METFV
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP77927.1}; Flags: Precursor;; species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanothermaceae; Methanothermus.;" source="Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 /; V24 S).;"
S_p1_S3_coassembly_k141_560915_11
RIFOXYD1_FULL_WWE3_39_9_curated, WWE3, Bacteria

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7504..7962
DNA (459bp) protein (153aa)
hypothetical protein
hypothetical protein; K09005 hypothetical protein bin=GW2011_AR10_complete species=Rhodanobacter fulvus genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=RIFOXYD1_FULL_WWE3_39_9_curated
S_p1_S3_coassembly_k141_560915_12
AR20, Woesearchaeaota, DPANN, Archaea

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7940..8998
DNA (1059bp) protein (353aa)
RNA methylase Tax=Sulfolobus acidocaldarius RepID=Q4J9A5_SULAC bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
RNA methylase
Tax=AR20
S_p1_S3_coassembly_k141_560915_13
unknown

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9065..10030
DNA (966bp) protein (322aa)

This feature has no annotations

S_p1_S3_coassembly_k141_560915_14
Candidatus Methanomassiliicoccus intestinalis, Methanomassiliicoccus, Methanomassiliicoccales, Thermoplasmata, Euryarchaeota, Archaea

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10032..11384
DNA (1353bp) protein (451aa)
phosphoenolpyruvate synthase (EC:2.7.9.2)
Phosphoenolpyruvate synthase {ECO:0000313|EMBL:AGN26637.1}; EC=2.7.9.2 {ECO:0000313|EMBL:AGN26637.1};; species="Archaea; Euryarchaeota; Thermoplasmata; Methanomassiliicoccales; Methanomassiliicoccaceae; Methanomassiliicoccus.;" source="Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1.;"
Phosphoenolpyruvate synthase Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T6N7_9EURY
S_p1_S3_coassembly_k141_560915_15
unknown

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11531..12460
DNA (930bp) protein (310aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037F30CA
S_p1_S3_coassembly_k141_560915_16
Pyrobaculum aerophilum, Pyrobaculum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

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12495..12683
DNA (189bp) protein (63aa)
30S ribosomal protein S17e Tax=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) RepID=RS17E_PYRAE
rps17E; 30S ribosomal protein S17
30S ribosomal protein S17e {ECO:0000255|HAMAP-Rule:MF_00511}; species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum.;" source="Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630; / NBRC 100827).;"
S_p1_S3_coassembly_k141_560915_17

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12811..13026
DNA (216bp) protein (72aa)
Marine sediment metagenome DNA, contig: S01H1_S07743 {ECO:0000313|EMBL:GAG01145.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
DNA/RNA-binding protein Alba; K03622 archaea-specific DNA-binding protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA/RNA-binding protein Alba
S_p1_S3_coassembly_k141_560915_18
AR20, Woesearchaeaota, DPANN, Archaea

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13096..14802
DNA (1707bp) protein (569aa)
Transporter, CPA2 family Tax=Methanococcus maripaludis RepID=A4FZ11_METM5 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Transporter, CPA2 family
Tax=AR20
S_p1_S3_coassembly_k141_560915_trna_1
unknown

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comp(14803..14876)
DNA (74bp)
transferRNA Met
S_p1_S3_coassembly_k141_560915_19
GWF2_OD1_39_8, Falkowbacteria, Parcubacteria, Bacteria

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comp(14900..15268)
DNA (369bp) protein (123aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003727C46
Histidine triad (HIT) protein {ECO:0000313|EMBL:KKR32667.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Falkowbacteria) bacterium GW2011_GWF2_39_8.;"
Histidine triad (HIT) protein
Displaying 21 items

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