ggKbase home page
Advanced Search
Search Help

ig5770_Micrarchaeota_40_59

ig5770_unknown_40_59
In projects: ig5770  |  cpr-dpann-all  |  DPANN_meta

Consensus taxonomy:

Metagenomic Context

Parent: ig5770_UNK

Properties

Avg. coverage: 58.82 Longest contig: 50.39 Kbp Bin length: 951.15 Kbp GC content: 40.43 %
Contigs count: 113 Features count: 1268 rRNAs count: 1 tRNAs count: 6

Genome completeness

near complete RP 36 / 55 MC: 4 BSCG 17 / 51 MC: 1 ASCG 37 / 38

Description

Intersect_07M_2015.022_&_07M_2015.003. 7 kbp 16S rRNA with NNN internal (no identified intron)

Displaying items 51-100 of 113 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
Ig5770_scaffold_10595 9 5250 bp 41.87 61.66 76.69
Ig5770_scaffold_5126 9 7681 bp 40.57 61.65 85.29
Ig5770_scaffold_15512 9 7061 bp 41.16 44.27 66.83
Ig5770_scaffold_21839
Domain: Archaea (50%)
8 4512 bp 41.42 65.79 82.85
Ig5770_scaffold_7616 8 3948 bp 36.90 55.43 71.88
Ig5770_scaffold_2317
Domain: Archaea (75%)
8 12839 bp 38.79 53.95 91.85
Ig5770_scaffold_8320
Domain: Archaea (50%)
8 4496 bp 42.15 63.92 82.47
Ig5770_scaffold_27627 8 4916 bp 40.03 48.82 89.22
Ig5770_scaffold_4988
Domain: Archaea (62.5%)
8 5448 bp 37.87 52.31 54.63
Ig5770_scaffold_11640 8 5433 bp 42.57 50.83 86.47
Ig5770_scaffold_15532 7 3396 bp 42.79 60.69 70.94
Ig5770_scaffold_7061 7 4174 bp 42.05 51.64 78.77
Ig5770_scaffold_6075 7 4704 bp 29.83 44.45 91.01
Ig5770_scaffold_7314
Domain: Archaea (66.67%)
6 6029 bp 42.73 63.12 85.34
Ig5770_scaffold_15304 6 4562 bp 39.46 56.98 79.64
Ig5770_scaffold_6667 6 4364 bp 42.05 63.83 82.84
Ig5770_scaffold_9530
Domain: Archaea (50%)
6 5513 bp 37.58 61.84 67.42
Ig5770_scaffold_12650
Domain: Archaea (50%)
6 3864 bp 40.63 64.56 82.76
Ig5770_scaffold_6027 6 9172 bp 44.32 63.14 86.48
Ig5770_scaffold_9673 6 5102 bp 39.38 51.77 47.16
Ig5770_scaffold_8650 6 3587 bp 40.62 61.85 67.33
Ig5770_scaffold_42459
Phylum: Micrarchaeota (60%)
5 3014 bp 42.20 68.33 62.01
Ig5770_scaffold_9201
Domain: Archaea (60%)
5 3435 bp 42.71 61.05 82.01
Ig5770_scaffold_12834 5 2687 bp 38.59 66.82 87.20
Ig5770_scaffold_25332 5 2207 bp 36.34 38.60 67.83
Ig5770_scaffold_3363
Domain: Archaea (80%)
5 9242 bp 47.58 70.94 85.44
Ig5770_scaffold_30193 5 2146 bp 39.89 58.71 81.36
Ig5770_scaffold_16208 4 2859 bp 39.52 61.65 65.69
Ig5770_scaffold_8230
Domain: Archaea (100%)
4 5641 bp 39.69 46.16 93.28
Ig5770_scaffold_12870
Domain: Archaea (50%)
4 2682 bp 40.53 50.34 83.22
Ig5770_scaffold_12880
Domain: Archaea (50%)
4 2681 bp 41.33 67.20 83.03
Ig5770_scaffold_9909
Species: RBG_16_Micrarchaeota_49_10_curated (50%)
4 3256 bp 39.77 60.40 99.14
Ig5770_scaffold_15225
Domain: Archaea (50%)
4 3498 bp 40.45 57.12 91.85
Ig5770_scaffold_5909
Phylum: Micrarchaeota (50%)
4 4795 bp 45.07 66.10 92.16
Ig5770_scaffold_20018 4 1926 bp 39.41 56.00 70.87
Ig5770_scaffold_26662 3 2711 bp 35.67 47.64 56.99
Ig5770_scaffold_22380
Domain: Archaea (66.67%)
3 1771 bp 26.54 35.66 95.20
Ig5770_scaffold_25777
Domain: Archaea (66.67%)
3 2011 bp 42.07 69.74 66.09
Ig5770_scaffold_40225 3 1759 bp 45.08 68.73 86.98
Ig5770_scaffold_23456 3 2831 bp 42.99 64.27 91.66
Ig5770_scaffold_37918 3 2760 bp 43.80 58.15 92.28
Ig5770_scaffold_26545 3 1549 bp 38.09 35.83 90.25
Ig5770_scaffold_24019 3 1677 bp 39.24 43.83 97.32
Ig5770_scaffold_53020 3 1428 bp 41.88 71.01 61.55
Ig5770_scaffold_29754 3 2014 bp 42.75 45.43 92.65
Ig5770_scaffold_14716
Domain: Archaea (66.67%)
3 3937 bp 39.67 59.51 41.38
Ig5770_scaffold_24343 3 1659 bp 40.99 53.44 83.18
Ig5770_scaffold_13574
Species: RBG_16_Micrarchaeota_36_9_curated (50%)
2 2572 bp 47.55 62.52 84.10
Ig5770_scaffold_24754 2 1638 bp 40.66 43.86 97.07
Ig5770_scaffold_20946
Species: archaeon GW2011_AR13 (50%)
2 1860 bp 35.22 40.48 82.58
Displaying items 51-100 of 113 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.