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ig5770_Micrarchaeota_40_59

ig5770_unknown_40_59
In projects: ig5770  |  cpr-dpann-all  |  DPANN_meta

Consensus taxonomy:

Metagenomic Context

Parent: ig5770_UNK

Properties

Avg. coverage: 58.82 Longest contig: 50.39 Kbp Bin length: 951.15 Kbp GC content: 40.43 %
Contigs count: 113 Features count: 1268 rRNAs count: 1 tRNAs count: 6

Genome completeness

near complete RP 36 / 55 MC: 4 BSCG 17 / 51 MC: 1 ASCG 37 / 38

Description

Intersect_07M_2015.022_&_07M_2015.003. 7 kbp 16S rRNA with NNN internal (no identified intron)

Displaying items 1-50 of 113 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
Ig5770_scaffold_41182 1 1067 bp 39.64 47.24 16.03
Ig5770_scaffold_14716
Domain: Archaea (66.67%)
3 3937 bp 39.67 59.51 41.38
Ig5770_scaffold_9673 6 5102 bp 39.38 51.77 47.16
Ig5770_scaffold_4988
Domain: Archaea (62.5%)
8 5448 bp 37.87 52.31 54.63
Ig5770_scaffold_26662 3 2711 bp 35.67 47.64 56.99
Ig5770_scaffold_11044 20 13330 bp 35.66 50.82 57.50
Ig5770_scaffold_53020 3 1428 bp 41.88 71.01 61.55
Ig5770_scaffold_42459
Phylum: Micrarchaeota (60%)
5 3014 bp 42.20 68.33 62.01
Ig5770_scaffold_16208 4 2859 bp 39.52 61.65 65.69
Ig5770_scaffold_25777
Domain: Archaea (66.67%)
3 2011 bp 42.07 69.74 66.09
Ig5770_scaffold_41655
Species: Methanopyrus kandleri (100%)
1 1056 bp 40.25 47.44 66.76
Ig5770_scaffold_15512 9 7061 bp 41.16 44.27 66.83
Ig5770_scaffold_8650 6 3587 bp 40.62 61.85 67.33
Ig5770_scaffold_9530
Domain: Archaea (50%)
6 5513 bp 37.58 61.84 67.42
Ig5770_scaffold_25332 5 2207 bp 36.34 38.60 67.83
Ig5770_scaffold_20018 4 1926 bp 39.41 56.00 70.87
Ig5770_scaffold_15532 7 3396 bp 42.79 60.69 70.94
Ig5770_scaffold_2616 25 16018 bp 41.60 66.51 71.58
Ig5770_scaffold_7616 8 3948 bp 36.90 55.43 71.88
Ig5770_scaffold_4527
Domain: Archaea (54.55%)
11 9296 bp 39.04 51.49 73.77
Ig5770_scaffold_5963 12 8767 bp 40.71 55.66 75.18
Ig5770_scaffold_30142
Species: marine sediment metagenome (100%)
1 1400 bp 40.00 32.04 75.43
Ig5770_scaffold_4438 15 12711 bp 40.00 50.21 76.52
Ig5770_scaffold_10595 9 5250 bp 41.87 61.66 76.69
Ig5770_scaffold_2026
Domain: Archaea (50%)
16 12224 bp 40.18 61.78 78.29
Ig5770_scaffold_3537
Domain: Archaea (55.56%)
27 16383 bp 40.99 61.65 78.30
Ig5770_scaffold_6005 19 14258 bp 39.12 57.26 78.50
Ig5770_scaffold_3476
Species: RBG_16_Micrarchaeota_36_9_curated (61.54%)
13 7314 bp 42.11 65.75 78.55
Ig5770_scaffold_3955 23 14975 bp 41.38 60.27 78.75
Ig5770_scaffold_7061 7 4174 bp 42.05 51.64 78.77
Ig5770_scaffold_15304 6 4562 bp 39.46 56.98 79.64
Ig5770_scaffold_4728 13 8999 bp 39.98 65.57 79.64
Ig5770_scaffold_7916
Domain: Archaea (50%)
12 9218 bp 37.83 53.16 79.67
Ig5770_scaffold_5951
Domain: Archaea (61.54%)
13 14062 bp 40.93 68.22 80.73
Ig5770_scaffold_30193 5 2146 bp 39.89 58.71 81.36
Ig5770_scaffold_5134
Domain: Archaea (50%)
14 6102 bp 38.36 71.46 81.61
Ig5770_scaffold_2078 19 15864 bp 40.29 63.85 81.90
Ig5770_scaffold_9201
Domain: Archaea (60%)
5 3435 bp 42.71 61.05 82.01
Ig5770_scaffold_2335 42 31208 bp 40.07 58.74 82.16
Ig5770_scaffold_8320
Domain: Archaea (50%)
8 4496 bp 42.15 63.92 82.47
Ig5770_scaffold_20946
Species: archaeon GW2011_AR13 (50%)
2 1860 bp 35.22 40.48 82.58
Ig5770_scaffold_42108
Species: BJP_IG2069_Methanobacteriales_33_27 (50%)
2 1046 bp 42.54 52.77 82.60
Ig5770_scaffold_5657 15 7374 bp 38.66 55.96 82.63
Ig5770_scaffold_12650
Domain: Archaea (50%)
6 3864 bp 40.63 64.56 82.76
Ig5770_scaffold_889 26 21814 bp 41.69 63.96 82.83
Ig5770_scaffold_6667 6 4364 bp 42.05 63.83 82.84
Ig5770_scaffold_21839
Domain: Archaea (50%)
8 4512 bp 41.42 65.79 82.85
Ig5770_scaffold_12880
Domain: Archaea (50%)
4 2681 bp 41.33 67.20 83.03
Ig5770_scaffold_1891
Domain: Archaea (56.14%)
57 33375 bp 42.29 67.51 83.16
Ig5770_scaffold_24343 3 1659 bp 40.99 53.44 83.18
Displaying items 1-50 of 113 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.