ggKbase home page

ERMGT100_2_curated_scaffold_1

Search features with annotation key words

Displaying items 91-120 of 416 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ERMGT100_2_curated_scaffold_1_91
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(110063..111175)
-----------------
DNA (1113bp)
protein (371aa)
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FH06_SORC5 id=5223321 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
3-methyl-2-oxobutanoate dehydrogenase subunit alpha
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_92
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(111172..112410)
-----------------
DNA (1239bp)
protein (413aa)
Pyruvate dehydrogenase E2 component (Dihydrolipoamide acetyltransferase) n=2 Tax=uncultured candidate division OP1 bacterium RepID=H5SJG6_9BACT id=5223322 bin=16ft_combo_ws3_JS1 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
pdhC1; alpha keto acid dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_93
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(112420..113394)
-----------------
DNA (975bp)
protein (325aa)
Transketolase central region n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HBV1_ANADF id=5223323 bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
transketolase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_94
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

Not on your lists

comp(113417..114088)
-----------------
DNA (672bp)
protein (224aa)
Tax=RBG_13_Caldithrix_44_9_curated
ERMGT100_2_curated_scaffold_1_95
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

114259..114957
-----------------
DNA (699bp)
protein (233aa)
iron dependent repressor, putative n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4E08 id=5223324 bin=16ft_combo_ws3_JS1 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
DtxR family iron dependent repressor
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_96
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

114947..115603
-----------------
DNA (657bp)
protein (219aa)
Putative uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X381_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AAP58483.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
isoprenylcysteine carboxyl methyltransferase
ERMGT100_2_curated_scaffold_1_97
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

115629..117641
-----------------
DNA (2013bp)
protein (671aa)
natural resistance-associated macrophage protein metal ion transporter NRAMP id=24447025 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
natural resistance-associated macrophage protein metal ion transporter NRAMP
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_98
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

117638..118159
-----------------
DNA (522bp)
protein (174aa)
alias=16ft_combo_ws3_scaffold_1078_10 id=24447024 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_99
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

118167..118844
-----------------
DNA (678bp)
protein (226aa)
Alpha/beta hydrolase n=1 Tax=uncultured bacterium 'To-T 020 P12' RepID=K9ND05_9BACT id=5223327 bin=16ft_combo_ws3_JS1 species=uncultured bacterium 'To-T 020 P12' genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative alpha/beta superfamily hydrolase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_100
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

118890..120152
-----------------
DNA (1263bp)
protein (421aa)
Probable lipoprotein id=3393305 bin=GWC2_Ignavibacteria_56_12 species=Flavobacterium psychrophilum genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
thiol oxidoreductase
Tax=GWC2_Gemmatimonadetes_71_10_curated
ERMGT100_2_curated_scaffold_1_101
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

120149..121366
-----------------
DNA (1218bp)
protein (406aa)
Putative uncharacterized protein id=3393298 bin=GWC2_Ignavibacteria_56_12 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
ERMGT100_2_curated_scaffold_1_102
unknown

Not on your lists

121400..122143
-----------------
DNA (744bp)
protein (248aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_1_103
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

122362..123804
-----------------
DNA (1443bp)
protein (481aa)
RND family efflux transporter MFP subunit n=1 Tax=Ralstonia sp. PBA RepID=I9KWP3_9RALS
RND family efflux transporter MFP subunit
RND family efflux transporter MFP subunit {ECO:0000313|EMBL:BAO30510.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
ERMGT100_2_curated_scaffold_1_104
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

123801..125021
-----------------
DNA (1221bp)
protein (407aa)
hypothetical protein id=14430236 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
export ABC transporter permease
Tax=RBG_16_Zixibacteria_43_9_curated
ERMGT100_2_curated_scaffold_1_105
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

125025..125408
-----------------
DNA (384bp)
protein (128aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KWN7_HALH1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE51377.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
ERMGT100_2_curated_scaffold_1_106
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

125535..126029
-----------------
DNA (495bp)
protein (165aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Streptomyces RepID=G0PUQ0_STRGR id=5224661 bin=16ft_combo_ws3_JS1 species=unknown genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RNA polymerase sigma-H factor
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_107
unknown

Not on your lists

126026..126373
-----------------
DNA (348bp)
protein (116aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_1_108
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

126370..126780
-----------------
DNA (411bp)
protein (137aa)
id=5224659 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_109
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

126777..127322
-----------------
DNA (546bp)
protein (182aa)
Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GM07_THISH id=5224658 bin=16ft_combo_ws3_JS1 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_110
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

127486..130176
-----------------
DNA (2691bp)
protein (897aa)
TonB-dependent receptor id=24426810 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Shewanella halifaxensis genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
ERMGT100_2_curated_scaffold_1_111
unknown

Not on your lists

130462..131295
-----------------
DNA (834bp)
protein (278aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_1_112
unknown

Not on your lists

131363..131944
-----------------
DNA (582bp)
protein (194aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_1_113
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(131919..133658)
-----------------
DNA (1740bp)
protein (580aa)
UPI000273B5EA related cluster n=1 Tax=unknown RepID=UPI000273B5EA id=5223333 bin=16ft_combo_ws3_JS1 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_114
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

133823..135082
-----------------
DNA (1260bp)
protein (420aa)
id=5223334 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_115
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

135079..135840
-----------------
DNA (762bp)
protein (254aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Oscillatoria acuminata PCC 6304 RepID=K9TG89_9CYAN id=5223335 bin=16ft_combo_ws3_JS1 species=Oscillatoria acuminata genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_116
unknown

Not on your lists

135955..136854
-----------------
DNA (900bp)
protein (300aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_1_117
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(136871..137281)
-----------------
DNA (411bp)
protein (137aa)
id=5223337 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_118
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(137278..138567)
-----------------
DNA (1290bp)
protein (430aa)
major facilitator superfamily protein n=1 Tax=Bacillus sp. m3-13 RepID=UPI0001E89BF0 id=5223677 bin=16ft_combo_ws3_JS1 species=Bacillus sp. m3-13 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
multidrug-efflux transporter
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_119
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(138665..139261)
-----------------
DNA (597bp)
protein (199aa)
transcriptional regulator id=24506214 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
transcriptional regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_1_120
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(139308..141173)
-----------------
DNA (1866bp)
protein (622aa)
ABC transporter, ATPase subunit; K06147 ATP-binding cassette, subfamily B, bacterial id=24506215 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
MdlB; ABC-type multidrug/protein/lipid transport system, ATPase component
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying items 91-120 of 416 in total

View Taxonomy