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ERMGT100_2_curated_scaffold_30

Search features with annotation key words

Displaying items 31-53 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ERMGT100_2_curated_scaffold_30_31
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(39695..43024)
-----------------
DNA (3330bp)
protein (1110aa)
Cobalt-zinc-cadmium resistance protein CzcA/Cation efflux system protein CusA {ECO:0000313|EMBL:EYF07623.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
inner membrane component for iron transport; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA id=24470342 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
CzcA family heavy metal efflux protein
ERMGT100_2_curated_scaffold_30_32
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(43021..44289)
-----------------
DNA (1269bp)
protein (423aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P089_9BACT id=5225059 bin=16ft_combo_ws3_JS1 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
secretion protein HlyD
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_30_33
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(44286..45578)
-----------------
DNA (1293bp)
protein (431aa)
Outer membrane efflux protein n=2 Tax=Desulfovibrio africanus RepID=F3Z0H8_DESAF id=5225060 bin=16ft_combo_ws3_JS1 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
outer membrane efflux protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_30_34
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(46193..46768)
-----------------
DNA (576bp)
protein (192aa)
hypothetical protein id=24454515 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_30_35
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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46890..47375
-----------------
DNA (486bp)
protein (162aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IG52_ANADE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC83561.1}; Flags: Precursor;; TaxID=290397 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-C).;"
ERMGT100_2_curated_scaffold_30_36
unknown

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47392..47718
-----------------
DNA (327bp)
protein (109aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_30_37
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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47745..48173
-----------------
DNA (429bp)
protein (143aa)
id=5225434 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_30_38
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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comp(48196..50940)
-----------------
DNA (2745bp)
protein (915aa)
pyruvate dehydrogenase E1 component, homodimeric type (EC:1.2.4.1); K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1] id=24546726 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
pyruvate dehydrogenase E1 component, homodimeric type (EC:1.2.4.1)
Tax=GWC2_RIF_CHLX_73_18_curated
ERMGT100_2_curated_scaffold_30_39
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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51031..53043
-----------------
DNA (2013bp)
protein (671aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Rheinheimera sp. A13L RepID=F7NZ42_9GAMM id=5225010 bin=16ft_combo_ws3_JS1 species=Rheinheimera sp. A13L genus=Rheinheimera taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
dipeptidyl aminopeptidase/acylaminoacyl-peptidase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_30_40
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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53010..54068
-----------------
DNA (1059bp)
protein (353aa)
thiamine biosynthesis protein id=24595578 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
thiamine biosynthesis protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_30_41
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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54065..54673
-----------------
DNA (609bp)
protein (203aa)
oxidoreductase protein id=24595577 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
oxidoreductase protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_30_42
Colletotrichum sublineola, Colletotrichum, Glomerellales, Hypocreomycetidae, Ascomycota, Fungi

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54698..56455
-----------------
DNA (1758bp)
protein (586aa)
Minus agglutinin n=2 Tax=Chlamydomonas reinhardtii RepID=Q6SSE8_CHLRE
Uncharacterized protein {ECO:0000313|EMBL:KDN62429.1}; TaxID=1173701 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Glomerellaceae; Colletotrichum.;" source="Colletotrichum sublineola (Sorghum anthracnose fungus).;"
OmpA/MotB
ERMGT100_2_curated_scaffold_30_43
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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56517..59126
-----------------
DNA (2610bp)
protein (870aa)
id=5225021 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
clpB; chaperone
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_30_44
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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59531..61459
-----------------
DNA (1929bp)
protein (643aa)
UPI00028A03E1 related cluster n=1 Tax=unknown RepID=UPI00028A03E1 id=5223307 bin=16ft_combo_ws3_JS1 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
bpr; Bacillopeptidase F
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_30_45
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(61456..62784)
-----------------
DNA (1329bp)
protein (443aa)
Diguanylate cyclase with GAF sensor n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A1P3_MAHA5 id=5223309 bin=16ft_combo_ws3_JS1 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
diguanylate cyclase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_30_46
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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63002..63469
-----------------
DNA (468bp)
protein (156aa)
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02768 PTS system, fructose-specific IIA component [EC:2.7.1.69]; K02769 PTS system, fructose-specific IIB component [EC:2.7.1.69]; K02770 PTS system, fructose-specific IIC component id=24586867 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Fibrobacter succinogenes genus=Fibrobacter taxon_order=Fibrobacterales taxon_class=Fibrobacteria phylum=Fibrobacteres tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
PTS fructose transporter subunit IIC
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_30_47
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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63497..64150
-----------------
DNA (654bp)
protein (218aa)
alias=16ft_combo_ws3_scaffold_10767_9 id=24586868 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_30_48
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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64150..65475
-----------------
DNA (1326bp)
protein (442aa)
id=5223313 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_30_49
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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65472..66680
-----------------
DNA (1209bp)
protein (403aa)
id=5223314 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_30_50
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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66854..68251
-----------------
DNA (1398bp)
protein (466aa)
hypothetical protein id=24490876 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Ig domain-containing protein group 2 domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_30_51
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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68494..71676
-----------------
DNA (3183bp)
protein (1061aa)
Cadherin domain-containing protein,putative collagen-binding protein n=2 Tax=Singulisphaera acidiphila RepID=L0DGG5_SINAD
cadherin domain-containing protein
Cadherin domain-containing protein,putative collagen-binding protein {ECO:0000313|EMBL:AGA28357.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
ERMGT100_2_curated_scaffold_30_52
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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71874..75248
-----------------
DNA (3375bp)
protein (1125aa)
Filamentous haemagglutinin-like protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C675_9PLAN
Strain MEJ076 contig_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ03817.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
ERMGT100_2_curated_scaffold_30_53
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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75312..76238
-----------------
DNA (927bp)
protein (309aa)
hypothetical protein id=24491861 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying items 31-53 of 53 in total

View Taxonomy