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PLM4_90_b2_sep16_scaffold_4344

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b2_sep16_scaffold_4344_1
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2..511)
DNA (510bp) protein (170aa)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8AD77_THEID
MiaB family RNA modification protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_4344_2
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(699..1991)
DNA (1293bp) protein (431aa)
Fructose-bisphosphate aldolase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G6N8_GEOUR
fructose/tagatose bisphosphate aldolase-like protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_4344_3
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2068..3063)
DNA (996bp) protein (332aa)
fructose-1,6-bisphosphatase (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 1 Tax=Syntrophus aciditrophicus (strain SB) RepID=F16PA_SYNAS
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_4344_4
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3422..4162)
DNA (741bp) protein (247aa)
surE; 5'/3'-nucleotidase SurE (EC:3.1.3.5 3.1.3.6); K03787 5'-nucleotidase [EC:3.1.3.5] bin=bin1_lowGC species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
stationary phase survival protein SurE
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_4344_5
RLO_PLX_64_10, Bacteria

Not on your lists

comp(4188..5141)
DNA (954bp) protein (318aa)
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00035D6406
transposase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_90_b2_sep16_scaffold_4344_6
unknown

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5347..5478
DNA (132bp) protein (44aa)

This feature has no annotations

PLM4_90_b2_sep16_scaffold_4344_trna_1
unknown

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comp(5555..5628)
DNA (74bp)
transferRNA Pro
PLM4_90_b2_sep16_scaffold_4344_7
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5661..6020)
DNA (360bp) protein (120aa)
Transcriptional regulator, MerR family bin=GWC2_Proteo_65_14_Ab886 species=ACD73 genus=ACD73 taxon_order=ACD73 taxon_class=ACD73 phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
MerR family transcriptional regulator
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_4344_8
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6033..6287)
DNA (255bp) protein (85aa)
Integration host factor subunit alpha Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=IHFA_ANADF
integration host factor subunit alpha
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_4344_9
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6771..9206)
DNA (2436bp) protein (812aa)
Phenylalanine--tRNA ligase beta subunit Tax=Geobacter metallireducens RepID=SYFB_GEOMG
pheT; phenylalanyl-tRNA ligase subunit beta
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_4344_10
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9212..9373)
DNA (162bp) protein (54aa)
Phenylalanine--tRNA ligase alpha subunit Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=SYFA_SYNFM
Suspect SCG annotation. See neighboring gene [PLM4_90_b2_sep16_scaffold_4344_11].
phenylalanyl-tRNA synthetase subunit alpha
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_4344_11
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9322..10200)
DNA (879bp) protein (293aa)
Phenylalanine--tRNA ligase alpha subunit bin=GWC2_Deltaproteobacteria_55_46 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
phenylalanyl-tRNA synthetase alpha chain
Tax=RBG_16_Deltaproteobacteria_54_11_curated
Displaying 12 items

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