ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

PLM4_90_b2_sep16_scaffold_3948_5

Organism: PLM4_90_b2_sep16_Deltaproteobacteria_54_9

near complete RP 42 / 55 MC: 1 BSCG 43 / 51 MC: 1 ASCG 12 / 38 MC: 1
Location: comp(4952..5152)

Top 3 Functional Annotations

Value Algorithm Source
Cold-shock DNA-binding protein family bin=GWC2_Deltaproteobacteria_55_46 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter similarity UNIREF
DB: UNIREF100
  • Identity: 71.2
  • Coverage: 66.0
  • Bit_score: 107
  • Evalue 2.90e-21
cold-shock DNA-binding domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 69.7
  • Coverage: 66.0
  • Bit_score: 104
  • Evalue 1.20e-20
Tax=RBG_16_Deltaproteobacteria_54_11_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 95.5
  • Coverage: 66.0
  • Bit_score: 135
  • Evalue 1.80e-29

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_16_Deltaproteobacteria_54_11_curated → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 201
ATGTCTAAAGGACGGGTAAAGTGGTTTAATGACAAGAAAGGGTACGGCTTCCTCGAGAGAGATGAAGGGGATGATGTCTTTGTTCACTACTCAGCTATCGAGGGAGAAGGTTTTAGGACCCTTTACGAAGGACAAGAAGTGGAGTTTGAGATCACGGACGGGCCTAAAGGACCCCAGGCCTCCAAAGTAACTCTGGTTTGA
PROTEIN sequence
Length: 67
MSKGRVKWFNDKKGYGFLERDEGDDVFVHYSAIEGEGFRTLYEGQEVEFEITDGPKGPQASKVTLV*