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FFSP_062018_mid_0_1um_Hydrogenophilales_62_23

FFSP_062018_mid_0_1um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_62_23
In projects: FFSP_062018_mid_0_1um  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Description

(J)

Displaying items 551-600 of 800 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
FFSP_062018_mid_0_1um_scaffold_4141
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 2942 bp 64.51 23.81 85.35
FFSP_062018_mid_0_1um_scaffold_5376
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 2299 bp 60.77 23.81 84.43
FFSP_062018_mid_0_1um_scaffold_7581
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1694 bp 65.70 23.82 99.88
FFSP_062018_mid_0_1um_scaffold_9934
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1353 bp 54.32 23.84 37.92
FFSP_062018_mid_0_1um_scaffold_1746
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (85.71%)
7 6241 bp 62.30 23.84 97.72
FFSP_062018_mid_0_1um_scaffold_14070
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1019 bp 60.55 23.85 99.80
FFSP_062018_mid_0_1um_scaffold_6717
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1887 bp 65.45 23.85 91.73
FFSP_062018_mid_0_1um_scaffold_2863
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 4099 bp 58.26 23.86 99.54
FFSP_062018_mid_0_1um_scaffold_794
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (78.57%)
14 10621 bp 58.34 23.88 90.93
FFSP_062018_mid_0_1um_scaffold_3283
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 3629 bp 63.05 23.89 97.96
FFSP_062018_mid_0_1um_scaffold_2162
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 5222 bp 64.06 23.90 91.11
FFSP_062018_mid_0_1um_scaffold_3787
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 3201 bp 61.51 23.90 88.38
FFSP_062018_mid_0_1um_scaffold_4226
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 2875 bp 64.31 23.90 93.91
FFSP_062018_mid_0_1um_scaffold_8066
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1607 bp 59.74 23.90 87.55
FFSP_062018_mid_0_1um_scaffold_2644
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
7 4385 bp 61.66 23.91 90.24
FFSP_062018_mid_0_1um_scaffold_2200
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 5165 bp 64.86 23.93 88.98
FFSP_062018_mid_0_1um_scaffold_3142
Order: Hydrogenophilales (85.71%)
7 3761 bp 59.59 23.93 89.90
FFSP_062018_mid_0_1um_scaffold_894
Order: Hydrogenophilales (58.33%)
12 9827 bp 62.08 23.96 98.42
FFSP_062018_mid_0_1um_scaffold_5568
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 2229 bp 62.81 23.96 100.94
FFSP_062018_mid_0_1um_scaffold_13706
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1039 bp 57.36 23.97 78.83
FFSP_062018_mid_0_1um_scaffold_3526
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 3403 bp 62.65 23.98 95.39
FFSP_062018_mid_0_1um_scaffold_843
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (92.31%)
13 10254 bp 59.66 23.99 93.12
FFSP_062018_mid_0_1um_scaffold_1326
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
6 7591 bp 64.68 23.99 96.94
FFSP_062018_mid_0_1um_scaffold_5561
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 2234 bp 62.18 24.04 91.45
FFSP_062018_mid_0_1um_scaffold_2079
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
6 5420 bp 61.90 24.05 92.27
FFSP_062018_mid_0_1um_scaffold_1030
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (87.5%)
8 8955 bp 61.35 24.05 94.74
FFSP_062018_mid_0_1um_scaffold_3327
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 3591 bp 63.35 24.06 95.66
FFSP_062018_mid_0_1um_scaffold_7545
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1701 bp 61.67 24.07 80.95
FFSP_062018_mid_0_1um_scaffold_2822
Species: GWE1_Thiobacillus_62_9_curated (50%)
6 4162 bp 62.23 24.11 97.45
FFSP_062018_mid_0_1um_scaffold_2609
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 4432 bp 62.18 24.13 94.09
FFSP_062018_mid_0_1um_scaffold_3229
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
7 3679 bp 57.35 24.14 95.98
FFSP_062018_mid_0_1um_scaffold_2717
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 4286 bp 64.07 24.15 95.26
FFSP_062018_mid_0_1um_scaffold_742
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (90%)
10 11132 bp 62.28 24.15 92.95
FFSP_062018_mid_0_1um_scaffold_1655
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
9 6488 bp 61.37 24.16 90.17
FFSP_062018_mid_0_1um_scaffold_1425
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
10 7288 bp 64.57 24.16 91.18
FFSP_062018_mid_0_1um_scaffold_2266
Species: GWE1_Thiobacillus_62_9_curated (83.33%)
6 5008 bp 63.26 24.17 89.62
FFSP_062018_mid_0_1um_scaffold_1866
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (70%)
10 5924 bp 61.77 24.23 89.74
FFSP_062018_mid_0_1um_scaffold_644
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (64.71%)
17 12095 bp 61.42 24.30 94.35
FFSP_062018_mid_0_1um_scaffold_9880
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1358 bp 60.82 24.30 81.74
FFSP_062018_mid_0_1um_scaffold_9776
Species: Thiobacillus denitrificans (100%)
1 1370 bp 63.87 24.31 99.85
FFSP_062018_mid_0_1um_scaffold_7491
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1714 bp 64.41 24.33 92.07
FFSP_062018_mid_0_1um_scaffold_8095
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1602 bp 65.04 24.34 100.56
FFSP_062018_mid_0_1um_scaffold_12281
Species: RBG_16_Betaproteobacteria_58_11_curated (50%)
2 1134 bp 53.70 24.34 72.75
FFSP_062018_mid_0_1um_scaffold_1060
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (90.91%)
11 8772 bp 61.99 24.35 95.62
FFSP_062018_mid_0_1um_scaffold_4101
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
6 2968 bp 59.37 24.36 86.12
FFSP_062018_mid_0_1um_scaffold_13193
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1071 bp 65.83 24.37 100.00
FFSP_062018_mid_0_1um_scaffold_2774
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 4216 bp 64.02 24.41 98.48
FFSP_062018_mid_0_1um_scaffold_1386
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
8 7416 bp 62.39 24.53 91.06
FFSP_062018_mid_0_1um_scaffold_6621
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1908 bp 65.20 24.53 100.63
FFSP_062018_mid_0_1um_scaffold_7962
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1626 bp 64.70 24.54 100.18
Displaying items 551-600 of 800 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.