ggKbase | organisms

Consensus taxonomy: Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: FUEL_CELL_S12_Rhizobiales_unk_64_8 Manually curated genome
Original version: FUEL_CELL_S12_Rhizobiales_unk_64_8

Properties

Avg. coverage: 1.00 Longest contig: 19.65 Kbp Bin length: 2.99 Mbp GC content: 62.94 %

Contigs count: 794 Features count: 3748 rRNAs count: 0 tRNAs count: 24

Genome completeness

partial RP 41 / 55 MC: 9 BSCG 38 / 51 MC: 9 ASCG 7 / 38 MC: 2

Displaying items 751-794 of 794 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
S12_scaffold_8205_curated Species: Hoeflea sp. BRH_c9 (50%)	2	2197 bp	49.75	1.00	36.19
S12_scaffold_12747_curated Species: Bradyrhizobium diazoefficiens (50%)	2	1356 bp	70.80	1.00	98.89
S12_scaffold_13233_curated Species: Mesorhizobium amorphae (50%)	2	1411 bp	66.83	1.00	94.83
S12_scaffold_4300_curated Species: Agrobacterium rubi (50%)	2	3926 bp	62.96	1.00	59.37
S12_scaffold_12602_curated Species: Devosia sp. 17-2-E-8 (50%)	2	1107 bp	60.79	1.00	42.01
S12_scaffold_13550_curated Species: Polymorphum gilvum (50%)	2	1393 bp	61.16	1.00	49.32
S12_scaffold_16250_curated Species: Chelativorans sp. BNC1 (50%)	2	1180 bp	58.31	1.00	37.37
S12_scaffold_12043_curated Species: Agrobacterium albertimagni (50%)	2	1405 bp	64.34	1.00	87.76
S12_scaffold_16069_curated Species: RBG_16_Alphaproteobacteria_64_48_curated (50%)	2	1173 bp	65.81	1.00	89.00
S12_scaffold_9578_curated Species: Azorhizobium caulinodans (50%)	2	1898 bp	65.91	1.00	89.78
S12_scaffold_6851_curated Species: Starkeya novella (50%)	2	2659 bp	53.22	1.00	70.85
S12_scaffold_12734_curated Species: Mesorhizobium sp. STM 4661 (50%)	2	1402 bp	56.99	1.00	35.31
S12_scaffold_12135_curated Species: Ochrobactrum anthropi (50%)	2	1445 bp	54.67	1.00	24.50
S12_scaffold_8430_curated Species: Afipia sp. P52-10 (50%)	2	1944 bp	59.26	1.00	64.04
S12_scaffold_16077_curated	2	1190 bp	55.97	1.00	57.48
S12_scaffold_17074_curated Species: Mesorhizobium huakuii (50%)	2	1132 bp	62.99	1.00	73.67
S12_scaffold_15702_curated Species: Rhodobacter sp. CACIA14H1 (50%)	2	1139 bp	63.74	1.00	97.45
S12_scaffold_9481_curated Species: Rhizobium gallicum (50%)	2	1776 bp	65.54	1.00	96.79
S12_scaffold_15105_curated Species: Methylobacterium populi (50%)	2	1260 bp	61.35	1.00	60.00
S12_scaffold_14285_curated Species: Chelativorans sp. BNC1 (50%)	2	1292 bp	64.94	1.00	84.29
S12_scaffold_8747_curated Species: Bosea sp. LC85 (50%)	2	1942 bp	64.16	1.00	97.48
S12_scaffold_7140_curated Species: Methylobacterium populi (50%)	2	2401 bp	61.72	1.00	78.34
S12_scaffold_13633_curated Species: Phyllobacterium sp. YR531 (50%)	2	1977 bp	61.15	1.00	33.69
S12_scaffold_10606_curated Species: Bradyrhizobiaceae bacterium SG-6C (50%)	2	1760 bp	69.15	1.00	96.82
S12_scaffold_10958_curated Species: Vibrio sp. JCM 19231 (50%)	2	2244 bp	55.17	1.00	42.11
S12_scaffold_17363_curated Species: Devosia geojensis (50%)	2	1115 bp	57.31	1.00	60.81
S12_scaffold_10756_curated Species: uncultured Rhizobiales bacterium HF4000_48A13 (100%)	2	1643 bp	60.56	1.00	87.46
S12_scaffold_10924_curated Species: Aureimonas altamirensis (50%)	2	1557 bp	50.55	1.00	49.33
S12_scaffold_8753_curated Species: Azospirillum lipoferum (50%)	2	2537 bp	63.18	1.00	76.74
S12_scaffold_10351_curated Species: Bradyrhizobium sp. LTSP849 (50%)	2	1549 bp	61.91	1.00	93.54
S12_scaffold_16645_curated Species: Ochrobactrum anthropi (50%)	2	1659 bp	58.95	1.00	41.41
S12_scaffold_14459_curated Species: Devosia geojensis (50%)	2	1223 bp	62.39	1.00	53.23
S12_scaffold_24378_curated Species: Rhizobium leguminosarum (50%)	2	1091 bp	54.54	1.00	65.17
S12_scaffold_6549_curated Species: Cellulomonas carbonis (50%)	2	2504 bp	67.93	1.00	94.29
S12_scaffold_12378_curated Species: Starkeya novella (50%)	2	1811 bp	60.08	1.00	62.62
S12_scaffold_10748_curated Species: Pseudomonas bauzanensis (50%)	2	1632 bp	66.24	1.00	88.24
S12_scaffold_14330_curated Species: Bosea sp. LC85 (50%)	2	1092 bp	64.19	1.00	77.20
S12_scaffold_18329_curated Species: Mesorhizobium alhagi (50%)	2	1050 bp	46.00	1.00	54.00
S12_scaffold_18642_curated	1	1049 bp	41.09	1.00	23.74
S12_scaffold_10812_curated Species: Mesorhizobium alhagi (100%)	1	1604 bp	38.28	1.00	17.39
S12_scaffold_13728_curated Species: Bradyrhizobiaceae bacterium SG-6C (100%)	1	1132 bp	69.61	1.00	99.65
S12_scaffold_10133_curated Species: Rhizobium tropici (100%)	1	1743 bp	56.74	1.00	14.29
S12_scaffold_15772_curated Species: Labrenzia sp. C1B10 (100%)	1	1122 bp	53.57	1.00	61.50
S12_scaffold_16491_curated	1	1129 bp	48.80	1.00	25.51

Displaying items 751-794 of 794 in total

S12_Rhizobiales_64_8_curated

FUEL_CELL_S12_Rhizobiales_63_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

S12_Rhizobiales_64_8_curated

FUEL_CELL_S12_Rhizobiales_63_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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