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S15_scaffold_320_curated_5

Organism: S15_RifCSP_Pseudomonas_62_25_curated

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: comp(5531..6400)

Top 3 Functional Annotations

Value Algorithm Source
Type IV / VI secretion system protein, DotU family n=1 Tax=Pseudomonas sp. GM41(2012) RepID=J2RC52_9PSED similarity UNIREF
DB: UNIREF100
  • Identity: 84.4
  • Coverage: 289.0
  • Bit_score: 494
  • Evalue 4.70e-137
  • rbh
Membrane protein {ECO:0000313|EMBL:KJZ65916.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.8
  • Coverage: 289.0
  • Bit_score: 495
  • Evalue 3.90e-137
membrane protein similarity KEGG
DB: KEGG
  • Identity: 84.4
  • Coverage: 289.0
  • Bit_score: 493
  • Evalue 2.30e-137

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Taxonomy

Pseudomonas fluorescens → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 870
ATGATCAAGGATCTGGAACACCCTCAGGACGATAAAACCGTTTTGCTTGACCGCCTTGGGCATGGCCCGGCGCGCAACCCGCTGACCGACTTCGCCGATCCCCCGCGTTTCGAGCAGTTAGAGGAACGGATGATCTATGCCGCACGCCTGGGCCCTGCGCAATCCTTCAGCGTCAGCCTCAACCCGCTCGTGGCGGCGGCGTCCGACCTGCTTTCGGAAGTGGTTCGCCTCAAGCACAGCGAGGCAGCTGAAGACTTGCGTGCACTCAATACGCGCCTGAGTGCCGGCCTCAGGCAGTTCGACGCGCGAGCCCTGCAGGACGGTGCGCTGAGCAGCCAGGTGATGGCCGCCCGCTATGTGTTGTGCACCGTGGTCGACGAGGCGGTGGTGAGCACCTCTTGGGGCAATGAAAGCCAGTGGTCACAAATGAGTCTGCTCAGCAGCTTTCACAACGAAACCTTCGGCGGCGAAAAGTTCTTCCAACTGCTGGATCGGCTGTCGAAGAACCCGGTCAAGCATCTGCCGATGCTGGAGCTGATGTACCTGTGCCTGTCGTTGGGGTTCGAGGGCAAGTACCGGGTCATTCCCCGCGGCGTGCTCGAGCTTGAGGGGATTCGCGACGCCTTGTACCGGCAGATCCGCCAGCTGCGTGGCGATGTGCCTCGTGAGCTGTCGCCACATTGGGAAGGGCTCGGCGATCAGCGTCGCGGCCTGGTGCGCATTGTGCCGGGGTGGATGGTTGCGCTGTTCACCGTGGTTTGCCTGCTGGTGATGTACTCGGGGTTTGCCTGGGTGCTGGGCCAGCAGCGCGAAAGCCTGTTGCAGACGTATCAACCGCTTGACCCGGTGGTGGTCCAGCCCCAGCAGTAA
PROTEIN sequence
Length: 290
MIKDLEHPQDDKTVLLDRLGHGPARNPLTDFADPPRFEQLEERMIYAARLGPAQSFSVSLNPLVAAASDLLSEVVRLKHSEAAEDLRALNTRLSAGLRQFDARALQDGALSSQVMAARYVLCTVVDEAVVSTSWGNESQWSQMSLLSSFHNETFGGEKFFQLLDRLSKNPVKHLPMLELMYLCLSLGFEGKYRVIPRGVLELEGIRDALYRQIRQLRGDVPRELSPHWEGLGDQRRGLVRIVPGWMVALFTVVCLLVMYSGFAWVLGQQRESLLQTYQPLDPVVVQPQQ*