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S15_scaffold_239_curated_3

Organism: S15_RifCSP_Pseudomonas_62_25_curated

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: 2732..3253

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, FecI family n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KED5_PSEF5 similarity UNIREF
DB: UNIREF100
  • Identity: 92.5
  • Coverage: 173.0
  • Bit_score: 323
  • Evalue 8.70e-86
  • rbh
RNA polymerase sigma factor, FecI family similarity KEGG
DB: KEGG
  • Identity: 92.5
  • Coverage: 173.0
  • Bit_score: 323
  • Evalue 2.50e-86
  • rbh
RNA polymerase sigma factor, FecI family {ECO:0000313|EMBL:AAY91564.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.5
  • Coverage: 173.0
  • Bit_score: 323
  • Evalue 1.20e-85

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Taxonomy

Pseudomonas protegens → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 522
ATGCCCGCCGACGACTTATCCCTGCGCAGTGCCGTCACCGACCTCTACACCCATCACCACGGCTGGCTGCAGGGCTGGTTGCGCCAGCGCCTGGGCAACACCTTCGATGCCGCCGATCTGGCCCAGGACACCTTCGTGCGGGTGCTCAAGGCGCGCAATGCCCTGGAGATCCGCGAGCCGCGGCCCTACCTGTCGCGCATCGCCAATGGCCTGCTGATCGATCTGTTTCGCCGCCGCTCCCTGGAGCAGGCGTACCTGGAGGCCCTGGCGCTGGTGCCCGAGGGCGAGCAGCCGTCGCCGGAGGAGCAGAACCTGATGCTCCAGGCACTGTTGGAGGTCGACCGGCTGCTGGACGGCCTGGGGGCAAGGGTCAAGCAGGCTTTCCTGCTGTCCCAGTGCGACGGCCTGACCTACGAGCAGATCGCCGAACGCCTGCAGATCTCGGTGCGCAGCGTCAACAACTACATGGCCAAGGCCATGGAGCATTGCTGCCTGATGCAGATGCGGATGCAGTTGTCATGA
PROTEIN sequence
Length: 174
MPADDLSLRSAVTDLYTHHHGWLQGWLRQRLGNTFDAADLAQDTFVRVLKARNALEIREPRPYLSRIANGLLIDLFRRRSLEQAYLEALALVPEGEQPSPEEQNLMLQALLEVDRLLDGLGARVKQAFLLSQCDGLTYEQIAERLQISVRSVNNYMAKAMEHCCLMQMRMQLS*