ggKbase | organisms

Consensus taxonomy: Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: FUEL_CELL_S5_Rhizobiales-rel_66_15 Manually curated genome
Original version: FUEL_CELL_S5_Rhizobiales-rel_66_15

Properties

Avg. coverage: 1.00 Longest contig: 26.10 Kbp Bin length: 2.53 Mbp GC content: 64.77 %

Contigs count: 756 Features count: 3158 rRNAs count: 0 tRNAs count: 25

Genome completeness

near complete RP 46 / 55 MC: 5 BSCG 45 / 51 MC: 4 ASCG 9 / 38

Displaying items 551-600 of 756 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
S5_scaffold_10626_curated Species: Rhizobium etli (50%)	2	1647 bp	68.12	1.00	90.16
S5_scaffold_10197_curated Species: Mesorhizobium sp. L48C026A00 (50%)	2	1651 bp	63.78	1.00	75.95
S5_scaffold_12485_curated Species: Mesorhizobium sp. LNHC232B00 (100%)	2	1400 bp	62.79	1.00	76.93
S5_scaffold_8996_curated Species: Chelativorans sp. BNC1 (50%)	2	1747 bp	65.77	1.00	94.45
S5_scaffold_8314_curated Species: Afipia broomeae (50%)	2	1941 bp	58.11	1.00	66.92
S5_scaffold_9225_curated Species: Nitratireductor indicus (50%)	2	1806 bp	59.19	1.00	48.17
S5_scaffold_7912_curated Species: Rhizobium sp. CF142 (50%)	2	2132 bp	62.10	1.00	82.60
S5_scaffold_9442_curated Species: Candidatus Accumulibacter sp. SK-11 (50%)	2	1805 bp	60.44	1.00	87.26
S5_scaffold_7362_curated Species: Lutibaculum baratangense (50%)	2	2297 bp	65.08	1.00	91.82
S5_scaffold_7914_curated Species: Nitratireductor pacificus (50%)	2	2151 bp	65.13	1.00	76.57
S5_scaffold_13468_curated Species: R_Rhodospirillales_65_14 (100%)	2	1353 bp	67.41	1.00	99.56
S5_scaffold_16451_curated Species: Rhizobium leguminosarum (50%)	2	1973 bp	64.12	1.00	71.16
S5_scaffold_11508_curated Species: Mesorhizobium metallidurans (100%)	2	1376 bp	57.41	1.00	87.65
S5_scaffold_6032_curated Species: Phenylobacterium zucineum (50%)	2	2704 bp	66.90	1.00	87.65
S5_scaffold_15899_curated Species: RBG_16_Chloroflexi_48_8_curated (100%)	2	1187 bp	65.63	1.00	92.25
S5_scaffold_17327_curated Species: Rhizobium leguminosarum (50%)	2	1055 bp	63.22	1.00	99.24
S5_scaffold_13841_curated Species: Bradyrhizobium sp. BTAi1 (50%)	2	1316 bp	64.29	1.00	89.59
S5_scaffold_15451_curated Species: Polymorphum gilvum (50%)	2	1148 bp	66.64	1.00	72.13
S5_scaffold_19818_curated Species: Nitratireductor indicus (50%)	2	1009 bp	58.47	1.00	84.14
S5_scaffold_11439_curated Species: Polymorphum gilvum (50%)	2	1504 bp	66.76	1.00	99.53
S5_scaffold_7896_curated Species: Afipia sp. 1NLS2 (50%)	2	2015 bp	64.42	1.00	82.63
S5_scaffold_11495_curated Species: alpha proteobacterium MA2 (50%)	2	1476 bp	65.85	1.00	96.95
S5_scaffold_7240_curated Species: Labrenzia alexandrii (50%)	2	2272 bp	65.93	1.00	98.11
S5_scaffold_9363_curated Species: Mesorhizobium alhagi (100%)	2	1715 bp	70.90	1.00	99.88
S5_scaffold_21184_curated Species: Methyloceanibacter caenitepidi (50%)	2	1764 bp	66.21	1.00	95.75
S5_scaffold_6638_curated Species: Mesorhizobium alhagi (50%)	2	2418 bp	67.78	1.00	90.45
S5_scaffold_16660_curated Species: Polymorphum gilvum (50%)	2	1141 bp	62.66	1.00	98.86
S5_scaffold_11935_curated Species: Mesorhizobium sp. LSJC280B00 (50%)	2	1325 bp	66.11	1.00	97.36
S5_scaffold_14185_curated Species: Afipia felis (50%)	2	1293 bp	57.23	1.00	95.36
S5_scaffold_9234_curated	2	1733 bp	60.36	1.00	50.89
S5_scaffold_6457_curated Species: Rhodopseudomonas palustris (50%)	2	2491 bp	65.56	1.00	99.60
S5_scaffold_10591_curated Species: Lutibaculum baratangense (50%)	2	1468 bp	68.46	1.00	88.69
S5_scaffold_13388_curated Species: Ensifer adhaerens (50%)	2	1178 bp	66.55	1.00	60.10
S5_scaffold_11921_curated Species: Shinella sp. DD12 (50%)	2	1378 bp	63.93	1.00	79.68
S5_scaffold_7324_curated Species: Polymorphum gilvum (50%)	2	2267 bp	66.56	1.00	99.12
S5_scaffold_10344_curated Species: Polymorphum gilvum (50%)	2	1635 bp	69.17	1.00	100.00
S5_scaffold_12296_curated Species: Afipia sp. P52-10 (50%)	2	1729 bp	67.15	1.00	97.34
S5_scaffold_18012_curated Species: Agrobacterium vitis (50%)	2	1072 bp	68.00	1.00	99.91
S5_scaffold_8774_curated Species: Rhodopseudomonas palustris (50%)	2	1818 bp	61.50	1.00	81.52
S5_scaffold_8295_curated Species: Agrobacterium rubi (50%)	2	2293 bp	66.20	1.00	77.58
S5_scaffold_4449_curated Species: Afipia sp. P52-10 (50%)	2	3529 bp	65.71	1.00	90.79
S5_scaffold_10986_curated Species: Aurantimonas manganoxydans (50%)	2	2254 bp	66.81	1.00	88.64
S5_scaffold_7427_curated Species: Labrenzia sp. C1B10 (50%)	2	2236 bp	67.44	1.00	99.15
S5_scaffold_19829_curated Species: Bradyrhizobium diazoefficiens (100%)	2	1343 bp	62.47	1.00	104.10
S5_scaffold_6396_curated Species: Lutibaculum baratangense (50%)	2	2349 bp	64.03	1.00	91.44
S5_scaffold_11229_curated Species: Rhizobium mesoamericanum (50%)	2	1524 bp	57.09	1.00	98.62
S5_scaffold_8642_curated Species: Nitratireductor aquibiodomus (50%)	2	1948 bp	61.29	1.00	87.78
S5_scaffold_6442_curated Species: Methyloceanibacter caenitepidi (50%)	2	2490 bp	67.11	1.00	98.55
S5_scaffold_13734_curated Species: Devosia geojensis (50%)	2	1338 bp	55.61	1.00	64.35
S5_scaffold_4078_curated Species: Chelativorans sp. BNC1 (50%)	2	3881 bp	66.04	1.00	99.33

Displaying items 551-600 of 756 in total

S5_Rhizobiales_66_15_curated

FUEL_CELL_S5_Rhizobiales_65_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

S5_Rhizobiales_66_15_curated

FUEL_CELL_S5_Rhizobiales_65_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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