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GD2017-2_S1_QB3_180125_Woesearchaeota-II_35_14

GD2017-2_S1_QB3_180125_Archaea_35_14
In projects: GD2017-2_S1_QB3_180125  |  genasci-metabolism  |  NC_groundwater_CPR_DPANN  |  DPANN  |  all_nc_groundwater_genomes  |  archaea_ggkbase

Consensus taxonomy: Archaea

Description

GD2017-2_S1_QB3_180125_Nano_Woesearchaeota_35_14; GD17-2_Sp1_CONCOCT_155 RK

Displaying items 1-50 of 85 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
S4_GD2017_2_S1_scaffold_4040
Domain: Archaea (91.18%)
34 17304 bp 37.02 16.34 94.07
S4_GD2017_2_S1_scaffold_11480
Domain: Archaea (60%)
20 9633 bp 34.66 16.55 89.82
S4_GD2017_2_S1_scaffold_7646 19 11682 bp 34.42 14.77 93.82
S4_GD2017_2_S1_scaffold_5006
Domain: Archaea (52.94%)
17 9499 bp 35.13 15.08 89.16
S4_GD2017_2_S1_scaffold_5538
Domain: Archaea (68.75%)
16 8843 bp 33.16 14.15 93.77
S4_GD2017_2_S1_scaffold_9376 15 9409 bp 35.09 15.40 89.88
S4_GD2017_2_S1_scaffold_15437
Domain: Archaea (57.14%)
14 10108 bp 36.71 12.48 89.39
S4_GD2017_2_S1_scaffold_7842 14 7721 bp 34.32 12.43 95.32
S4_GD2017_2_S1_scaffold_17950
Domain: Archaea (69.23%)
13 7486 bp 36.44 14.17 98.42
S4_GD2017_2_S1_scaffold_3732
Domain: Archaea (53.85%)
13 12408 bp 36.37 15.40 93.35
S4_GD2017_2_S1_scaffold_24587
Domain: Archaea (53.85%)
13 6996 bp 35.08 12.78 85.21
S4_GD2017_2_S1_scaffold_7767 12 10365 bp 35.37 11.95 87.21
S4_GD2017_2_S1_scaffold_14930
Domain: Archaea (50%)
12 6217 bp 33.05 13.46 89.90
S4_GD2017_2_S1_scaffold_27944 11 6685 bp 36.04 13.17 93.30
S4_GD2017_2_S1_scaffold_10097
Domain: Archaea (60%)
10 5833 bp 35.98 15.02 96.79
S4_GD2017_2_S1_scaffold_14371 10 7147 bp 33.34 13.18 91.76
S4_GD2017_2_S1_scaffold_8638 10 6490 bp 35.45 15.28 96.33
S4_GD2017_2_S1_scaffold_20538
Domain: Archaea (70%)
10 4934 bp 35.61 13.56 93.55
S4_GD2017_2_S1_scaffold_13903
Domain: Archaea (70%)
10 10337 bp 38.80 15.61 97.72
S4_GD2017_2_S1_scaffold_19668
Domain: Archaea (55.56%)
9 6359 bp 36.55 14.11 89.31
S4_GD2017_2_S1_scaffold_25502
Domain: Archaea (55.56%)
9 4903 bp 34.18 11.81 89.52
S4_GD2017_2_S1_scaffold_6732
Domain: Archaea (88.89%)
9 9086 bp 38.42 14.84 89.48
S4_GD2017_2_S1_scaffold_7786
Domain: Archaea (55.56%)
9 8348 bp 35.83 14.61 93.97
S4_GD2017_2_S1_scaffold_10615
Domain: Archaea (50%)
8 7521 bp 34.66 12.58 94.30
S4_GD2017_2_S1_scaffold_19117
Phylum: DPANN (50%)
8 4107 bp 34.96 14.68 96.42
S4_GD2017_2_S1_scaffold_10120
Domain: Archaea (75%)
8 7039 bp 36.81 14.41 96.70
S4_GD2017_2_S1_scaffold_32467
Domain: Archaea (50%)
8 2630 bp 34.64 16.43 89.43
S4_GD2017_2_S1_scaffold_17694 8 3977 bp 35.40 14.60 93.14
S4_GD2017_2_S1_scaffold_8372 8 6643 bp 36.88 15.42 85.85
S4_GD2017_2_S1_scaffold_6032
Domain: Archaea (75%)
8 8597 bp 35.20 15.65 89.52
S4_GD2017_2_S1_scaffold_18146 8 5109 bp 32.94 13.07 92.07
S4_GD2017_2_S1_scaffold_17534
Domain: Archaea (62.5%)
8 4000 bp 32.18 15.53 90.00
S4_GD2017_2_S1_scaffold_19253
Domain: Archaea (62.5%)
8 3759 bp 37.14 15.20 92.76
S4_GD2017_2_S1_scaffold_22967 8 3340 bp 37.93 12.40 85.60
S4_GD2017_2_S1_scaffold_11688
Domain: Archaea (50%)
8 5269 bp 34.01 13.35 97.70
S4_GD2017_2_S1_scaffold_29980
Class: Woesearchaeaota (50%)
8 4948 bp 35.39 14.01 84.72
S4_GD2017_2_S1_scaffold_8839
Domain: Archaea (57.14%)
7 6393 bp 34.83 14.59 95.68
S4_GD2017_2_S1_scaffold_13975
Domain: Archaea (71.43%)
7 4657 bp 33.84 12.05 93.92
S4_GD2017_2_S1_scaffold_49514
Domain: Archaea (57.14%)
7 3688 bp 33.05 12.45 80.69
S4_GD2017_2_S1_scaffold_27108
Domain: Archaea (71.43%)
7 5971 bp 34.80 15.07 82.45
S4_GD2017_2_S1_scaffold_9976 7 5882 bp 35.96 12.50 93.74
S4_GD2017_2_S1_scaffold_25272 7 4024 bp 34.99 14.43 79.17
S4_GD2017_2_S1_scaffold_66058
Domain: Archaea (57.14%)
7 4015 bp 35.39 12.37 92.73
S4_GD2017_2_S1_scaffold_15256 7 4386 bp 35.41 13.68 96.67
S4_GD2017_2_S1_scaffold_58159 7 3979 bp 35.89 14.51 92.28
S4_GD2017_2_S1_scaffold_23896 7 3248 bp 35.87 12.88 89.96
S4_GD2017_2_S1_scaffold_19026
Phylum: DPANN (57.14%)
7 4177 bp 35.70 13.83 97.89
S4_GD2017_2_S1_scaffold_13880 7 4678 bp 35.44 14.75 87.86
S4_GD2017_2_S1_scaffold_48854 7 2737 bp 32.37 13.98 91.63
S4_GD2017_2_S1_scaffold_41164
Domain: Archaea (50%)
6 3040 bp 35.36 12.29 87.24
Displaying items 1-50 of 85 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.