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GD18-4_B1_scaffold_158454

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GD18-4_B1_scaffold_158454_1
unknown

Not on your lists

comp(2..178)
-----------------
DNA (177bp)
protein (59aa)

This feature has no annotations

GD18-4_B1_scaffold_158454_2
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(491..754)
-----------------
DNA (264bp)
protein (88aa)
BolA family protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LVG0_HALO1
BolA family protein
BolA family protein {ECO:0000313|EMBL:ACY17521.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
GD18-4_B1_scaffold_158454_3
unknown

Not on your lists

comp(779..1753)
-----------------
DNA (975bp)
protein (325aa)

This feature has no annotations

GD18-4_B1_scaffold_158454_4
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1750..2658)
-----------------
DNA (909bp)
protein (303aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XX03_SORCE
Rhomboid family protein {ECO:0000313|EMBL:EYF05317.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
GD18-4_B1_scaffold_158454_5
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2957..3355
-----------------
DNA (399bp)
protein (133aa)
30S ribosomal protein S12 n=2 Tax=Sorangium cellulosum RepID=RS12_SORC5
30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
GD18-4_B1_scaffold_158454_6
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3408..3878
-----------------
DNA (471bp)
protein (157aa)
30S ribosomal protein S7 n=2 Tax=Sorangium cellulosum RepID=RS7_SORC5
rpsG; 30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000255|HAMAP-Rule:MF_00480}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
GD18-4_B1_scaffold_158454_7
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4152..6272
-----------------
DNA (2121bp)
protein (707aa)
Elongation factor G n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XN95_SORCE
fusA; elongation factor P
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
GD18-4_B1_scaffold_158454_8
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6293..6598
-----------------
DNA (306bp)
protein (102aa)
30S ribosomal protein S10 n=2 Tax=Sorangium cellulosum RepID=A9ETD5_SORC5
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
rpsJ; 30S ribosomal protein S10
GD18-4_B1_scaffold_158454_9
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6725..7348
-----------------
DNA (624bp)
protein (208aa)
50S ribosomal protein L4 n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9ETD9_SORC5
rplD; hypothetical protein
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
GD18-4_B1_scaffold_158454_10
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7358..7654
-----------------
DNA (297bp)
protein (99aa)
50S ribosomal protein L23 n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=RL23_SORC5
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
rplW; 50S ribosomal protein L23
GD18-4_B1_scaffold_158454_11
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7660..8493
-----------------
DNA (834bp)
protein (278aa)
50S ribosomal protein L2 n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XG81_SORCE
rplB; 50S ribosomal protein L2
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
GD18-4_B1_scaffold_158454_12
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8678..8965
-----------------
DNA (288bp)
protein (96aa)
30S ribosomal protein S19 n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=RS19_SORC5
rpsS; 30S ribosomal protein S19
30S ribosomal protein S19 {ECO:0000255|HAMAP-Rule:MF_00531}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
GD18-4_B1_scaffold_158454_13
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9088..9786
-----------------
DNA (699bp)
protein (233aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z8H6_9BRAD
DTW domain protein {ECO:0000313|EMBL:AKF09341.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
hypothetical protein
GD18-4_B1_scaffold_158454_14
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9836..10222)
-----------------
DNA (387bp)
protein (129aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YEG3_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP41238.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
GD18-4_B1_scaffold_158454_15
unknown

Not on your lists

10417..10803
-----------------
DNA (387bp)
protein (129aa)

This feature has no annotations

GD18-4_B1_scaffold_158454_16
Shewanella baltica, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10849..11340
-----------------
DNA (492bp)
protein (164aa)
TonB-dependent receptor plug n=1 Tax=Shewanella baltica (strain OS195) RepID=A9KW33_SHEB9
hypothetical protein
TonB-dependent receptor plug {ECO:0000313|EMBL:ABX51607.1}; Flags: Precursor;; TaxID=399599 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella baltica (strain OS195).;"
GD18-4_B1_scaffold_158454_17
Amycolatopsis decaplanina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11460..11885)
-----------------
DNA (426bp)
protein (142aa)
Uncharacterized protein n=1 Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2ZQR4_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:EME62684.1}; TaxID=1284240 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis decaplanina DSM 44594.;"
tolA; cell envelope integrity inner membrane protein TolA
GD18-4_B1_scaffold_158454_18
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12037..13578
-----------------
DNA (1542bp)
protein (514aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y9U6_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP41679.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
GD18-4_B1_scaffold_158454_19
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13579..15039)
-----------------
DNA (1461bp)
protein (487aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XY72_SORCE
Uncharacterized protein {ECO:0000313|EMBL:AKF07641.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
hypothetical protein
GD18-4_B1_scaffold_158454_20
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15036..16343)
-----------------
DNA (1308bp)
protein (436aa)
protein kinase (EC:2.7.11.1)
Protein kinase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9EQ70_SORC5
Serine/threonine protein kinase PrkC, regulation of stationary phase {ECO:0000313|EMBL:AKF07642.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
GD18-4_B1_scaffold_158454_21
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16419..17582
-----------------
DNA (1164bp)
protein (388aa)
Uncharacterized protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LXS8_HALO1
Tryptophan synthase alpha chain {ECO:0000313|EMBL:AKF09337.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
hypothetical protein
GD18-4_B1_scaffold_158454_22
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17579..19981
-----------------
DNA (2403bp)
protein (801aa)
Uncharacterized protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LXS8_HALO1
Tryptophan synthase alpha chain {ECO:0000313|EMBL:AKF09337.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
hypothetical protein
GD18-4_B1_scaffold_158454_23

Not on your lists

20375..21820
-----------------
DNA (1446bp)
protein (482aa)
Kelch motif protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKP4_CHLTF id=5223271 bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Marine sediment metagenome DNA, contig: S06H3_C00207 {ECO:0000313|EMBL:GAH95061.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
GD18-4_B1_scaffold_158454_24

Not on your lists

comp(21847..22728)
-----------------
DNA (882bp)
protein (294aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=G3CRF3_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:AEM45136.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
Alpha/beta hydrolase fold protein
GD18-4_B1_scaffold_158454_25
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22769..23167
-----------------
DNA (399bp)
protein (133aa)
Aspartate 1-decarboxylase {ECO:0000255|HAMAP-Rule:MF_00446}; EC=4.1.1.11 {ECO:0000255|HAMAP-Rule:MF_00446};; Aspartate alpha-decarboxylase {ECO:0000255|HAMAP-Rule:MF_00446}; Contains:; Aspartate 1-decarboxylase beta chain {ECO:0000255|HAMAP-Rule:MF_00446}; Contains:; Aspartate 1-decarboxylase alpha chain {ECO:0000255|HAMAP-Rule:MF_00446}; Flags: Precursor;; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
Aspartate 1-decarboxylase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=PAND_ANADF
aspartate 1-decarboxylase
GD18-4_B1_scaffold_158454_26
unknown

Not on your lists

comp(23301..23723)
-----------------
DNA (423bp)
protein (141aa)

This feature has no annotations

GD18-4_B1_scaffold_158454_27
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24356..30283
-----------------
DNA (5928bp)
protein (1976aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B3F866
Uncharacterized protein {ECO:0000313|EMBL:EWC60583.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
YD repeat-containing protein
GD18-4_B1_scaffold_158454_28
unknown

Not on your lists

30335..30688
-----------------
DNA (354bp)
protein (118aa)

This feature has no annotations

GD18-4_B1_scaffold_158454_29
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30805..31761)
-----------------
DNA (957bp)
protein (319aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GUA2_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN90590.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
GD18-4_B1_scaffold_158454_30
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


32133..32477
-----------------
DNA (345bp)
protein (115aa)
50S ribosomal protein L22 n=2 Tax=Sorangium cellulosum RepID=RL22_SORC5
50S ribosomal protein L22
50S ribosomal protein L22 {ECO:0000255|HAMAP-Rule:MF_01331}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
Displaying items 1-30 of 77 in total

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