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GD18-4_B1_scaffold_1097373

Search features with annotation key words

Displaying items 31-60 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GD18-4_B1_scaffold_1097373_31
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32145..32861)
-----------------
DNA (717bp)
protein (239aa)
phosphoglycerate mutase-like protein n=1 Tax=Schlesneria paludicola RepID=UPI00029ACA28
fructose-2,6-bisphosphatase
Tax=RBG_13_Deltaproteobacteria_61_14_curated
GD18-4_B1_scaffold_1097373_32
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32886..33554)
-----------------
DNA (669bp)
protein (223aa)
Putative Murein hydrolase export regulator, LrgB family protein n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FPM0_PHAMO
Putative Murein hydrolase export regulator, LrgB family protein {ECO:0000313|EMBL:CCG40308.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
LrgB family protein
GD18-4_B1_scaffold_1097373_33
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33551..33898)
-----------------
DNA (348bp)
protein (116aa)
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI00034A6D0B
LrgA family protein
LrgA family protein {ECO:0000313|EMBL:EDT42792.1}; TaxID=396597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria MEX-5.;"
GD18-4_B1_scaffold_1097373_34
unknown

Not on your lists

comp(33921..34862)
-----------------
DNA (942bp)
protein (314aa)

This feature has no annotations

GD18-4_B1_scaffold_1097373_35
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(34905..36074)
-----------------
DNA (1170bp)
protein (390aa)
topA; DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase I {ECO:0000313|EMBL:AGY59939.1}; EC=5.99.1.2 {ECO:0000313|EMBL:AGY59939.1};; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
DNA topoisomerase I n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QQP3_9CYAN
GD18-4_B1_scaffold_1097373_36
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36129..37733)
-----------------
DNA (1605bp)
protein (535aa)
protein kinase (EC:2.7.11.1)
Protein kinase {ECO:0000313|EMBL:CAN97951.1}; EC=2.7.11.1 {ECO:0000313|EMBL:CAN97951.1};; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
Protein kinase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FAX2_SORC5
GD18-4_B1_scaffold_1097373_37
unknown

Not on your lists

comp(37800..38111)
-----------------
DNA (312bp)
protein (104aa)

This feature has no annotations

GD18-4_B1_scaffold_1097373_38
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38184..38756
-----------------
DNA (573bp)
protein (191aa)
Transcription elongation factor GreB n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M3M3_GEODF
transcription elongation factor GreB
Transcription elongation factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; Transcript cleavage factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
GD18-4_B1_scaffold_1097373_39
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38758..39615)
-----------------
DNA (858bp)
protein (286aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XSH0_SORCE
Uncharacterized protein {ECO:0000313|EMBL:AKF04932.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
hypothetical protein
GD18-4_B1_scaffold_1097373_40
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39929..40786)
-----------------
DNA (858bp)
protein (286aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U892_MYXSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC42699.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
GD18-4_B1_scaffold_1097373_41
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40824..41909
-----------------
DNA (1086bp)
protein (362aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XZH9_SORCE
hypothetical protein
GD18-4_B1_scaffold_1097373_42
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41925..43121)
-----------------
DNA (1197bp)
protein (399aa)
Mannose-6-phosphate isomerase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9NVJ1_9DELT
Mannose-6-phosphate isomerase {ECO:0000313|EMBL:KFA88612.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
hypothetical protein
GD18-4_B1_scaffold_1097373_43
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(43220..43756)
-----------------
DNA (537bp)
protein (179aa)
Putative uncharacterized protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XNI2_9BACT
Putative zinc-or iron-chelating domain {ECO:0000313|EMBL:CDM64448.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
GD18-4_B1_scaffold_1097373_44
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43813..44589
-----------------
DNA (777bp)
protein (259aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XSF2_SORCE
Protein serine/threonine phosphatase PrpC, regulation of stationary phase {ECO:0000313|EMBL:EYF06856.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
GD18-4_B1_scaffold_1097373_45
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44590..45252)
-----------------
DNA (663bp)
protein (221aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
Peptide methionine sulfoxide reductase MsrA n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FY16_STIAD
msrA; methionine-s-sulfoxide reductase
GD18-4_B1_scaffold_1097373_46
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45371..45802
-----------------
DNA (432bp)
protein (144aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P4U5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33458.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
GD18-4_B1_scaffold_1097373_47
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(45772..46425)
-----------------
DNA (654bp)
protein (218aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
Pseudouridine synthase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MK65_RHOM4
pseudouridine synthase
GD18-4_B1_scaffold_1097373_48
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46475..47227
-----------------
DNA (753bp)
protein (251aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000377258C
23S rRNA (Guanosine-2'-O-)-methyltransferase rlmB {ECO:0000313|EMBL:AKF04092.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
tRNA/rRNA methyltransferase
GD18-4_B1_scaffold_1097373_49
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47427..47795
-----------------
DNA (369bp)
protein (123aa)
Rhodanese domain-containing protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MUW4_CORCM
pspE; rhodanese domain-containing protein
Rhodanese domain-containing protein {ECO:0000313|EMBL:AFE10012.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
GD18-4_B1_scaffold_1097373_50
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47799..48593)
-----------------
DNA (795bp)
protein (265aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XL73_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP33304.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
GD18-4_B1_scaffold_1097373_51
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48700..49185
-----------------
DNA (486bp)
protein (162aa)
Arsenate reductase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XMP2_SORCE
arsenate reductase
Arsenate reductase {ECO:0000313|EMBL:AGP33849.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
GD18-4_B1_scaffold_1097373_52
Enhygromyxa salina, Enhygromyxa, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49182..50123
-----------------
DNA (942bp)
protein (314aa)
Pyridoxal-5'-phosphate-dependent enzyme, beta subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJR2_9DELT
Cystathionine beta-synthase {ECO:0000313|EMBL:KIG16249.1}; TaxID=215803 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Enhygromyxa.;" source="Enhygromyxa salina.;"
cystathionine beta-synthase
GD18-4_B1_scaffold_1097373_53
unknown

Not on your lists

comp(50133..51086)
-----------------
DNA (954bp)
protein (318aa)

This feature has no annotations

GD18-4_B1_scaffold_1097373_54
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51306..51932
-----------------
DNA (627bp)
protein (209aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI0003786DD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE65188.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
GD18-4_B1_scaffold_1097373_55
Deinococcus phoenicis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

52033..52725
-----------------
DNA (693bp)
protein (231aa)
Dithiol-disulfide isomerase involved in polyketide biosynthesis n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RKQ1_BLASD
DSBA oxidoreductase {ECO:0000313|EMBL:EYB69572.1}; TaxID=1476583 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus phoenicis.;"
dsbA; dithiol-disulfide isomerase involved in polyketide biosynthesis
GD18-4_B1_scaffold_1097373_56
GWE2_Gallionellales_58_10_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52736..53275)
-----------------
DNA (540bp)
protein (180aa)
Uncharacterized protein id=1859851 bin=GWE2_Gallionellales_58_10 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
hypothetical protein
Tax=GWE2_Gallionellales_58_10_curated
GD18-4_B1_scaffold_1097373_57
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53339..54694)
-----------------
DNA (1356bp)
protein (452aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=395494 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea; capsiferriformans (strain ES-2)).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SEB1_GALCS
integral membrane sensor signal transduction histidine kinase
GD18-4_B1_scaffold_1097373_58
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54691..55356)
-----------------
DNA (666bp)
protein (222aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SEB0_GALCS
two component transcriptional regulator, winged helix family
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADL54886.1}; Flags: Precursor;; TaxID=395494 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea; capsiferriformans (strain ES-2)).;"
GD18-4_B1_scaffold_1097373_59
unknown

Not on your lists

comp(55485..55706)
-----------------
DNA (222bp)
protein (74aa)

This feature has no annotations

GD18-4_B1_scaffold_1097373_60
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55797..56231)
-----------------
DNA (435bp)
protein (145aa)
PhnB protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2SFG7_9DELT
PhnB protein {ECO:0000313|EMBL:ERK87220.1}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus sp. (contaminant ex DSM 436).;"
DGPF domain-containing protein
Displaying items 31-60 of 78 in total

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