ggKbase home page

L1_007_000M1_scaffold_118

Search features with annotation key words

Displaying items 61-89 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_118_61
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

59843..60802
DNA (960bp) protein (320aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQW6_9FIRM
L1_007_000M1_scaffold_118_62
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

60923..62203
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DUU0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82659.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_118_63
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

62247..62840
DNA (594bp) protein (198aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DR61_9FIRM
L1_007_000M1_scaffold_118_64
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

62855..66313
DNA (3459bp) protein (1153aa)
transcription-repair coupling factor (EC:3.6.1.-)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Transcription-repair-coupling factor n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5B3_9FIRM
L1_007_000M1_scaffold_118_65
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

66519..67715
DNA (1197bp) protein (399aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5B2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14807.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_118_66
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

67773..68654
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82655.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_118_67
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(68756..68980)
DNA (225bp) protein (75aa)
UPF0291 protein RBR_03960 n=3 Tax=root RepID=D4L5B0_9FIRM
hypothetical protein
UPF0291 protein RBR_03960 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_118_68
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

69152..70873
DNA (1722bp) protein (574aa)
Mismatch repair ATPase (MutS family) n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5A9_9FIRM
Mismatch repair ATPase (MutS family)
Mismatch repair ATPase (MutS family) {ECO:0000313|EMBL:CBL14804.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_118_69
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(71607..72545)
DNA (939bp) protein (313aa)
Predicted permeases n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV33_9FIRM
Predicted permeases {ECO:0000313|EMBL:CCX84090.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted permeases
L1_007_000M1_scaffold_118_70
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

72695..73075
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5A7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14802.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_118_71
unknown

Not on your lists

73093..74592
DNA (1500bp) protein (500aa)

This feature has no annotations

L1_007_000M1_scaffold_118_72
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

74655..74879
DNA (225bp) protein (75aa)
Uncharacterized conserved protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E7I4_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CCX84086.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_118_73
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(75200..76408)
DNA (1209bp) protein (403aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
acetate kinase (EC:2.7.2.1)
Acetate kinase n=2 Tax=root RepID=R5DYW9_9FIRM
L1_007_000M1_scaffold_118_74
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

76613..77749
DNA (1137bp) protein (379aa)
UPF0348 protein BN462_00046 n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVC5_9FIRM
UPF0348 protein BN462_00046 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted nucleotidyltransferase
L1_007_000M1_scaffold_118_75
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

78029..78820
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E5P9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84082.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_118_76
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

78897..81518
DNA (2622bp) protein (874aa)
acetaldehyde dehydrogenase/alcohol dehydrogenase AdhE (EC:1.1.1.1 1.2.1.10)
Acetaldehyde dehydrogenase /alcohol dehydrogenase AdhE n=2 Tax=root RepID=R5E7H9_9FIRM
Aldehyde-alcohol dehydrogenase {ECO:0000256|PIRNR:PIRNR000111}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_118_77
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

81950..82699
DNA (750bp) protein (250aa)
Phosphotransferase enzyme family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV25_9FIRM
Phosphotransferase enzyme family {ECO:0000313|EMBL:CCX84080.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Phosphotransferase enzyme family.
L1_007_000M1_scaffold_118_78
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

83196..84788
DNA (1593bp) protein (531aa)
Putative peptidoglycan-binding domain-containing protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYW5_9FIRM
Putative peptidoglycan-binding domain-containing protein
Putative peptidoglycan-binding domain-containing protein {ECO:0000313|EMBL:CBL14795.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_118_79
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

85345..86988
DNA (1644bp) protein (548aa)
Serine phosphatase RsbU, regulator of sigma subunit n=2 Tax=root RepID=D4L599_9FIRM
Serine phosphatase RsbU, regulator of sigma subunit
Serine phosphatase RsbU, regulator of sigma subunit {ECO:0000313|EMBL:CBL14794.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_118_80
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

86999..88153
DNA (1155bp) protein (385aa)
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L598_9FIRM
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control {ECO:0000313|EMBL:CBL14793.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_118_81
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

88949..92674
DNA (3726bp) protein (1242aa)
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:CBL14791.1}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:CBL14791.1};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L596_9FIRM
L1_007_000M1_scaffold_118_82
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

92687..96283
DNA (3597bp) protein (1199aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DLF7_9FIRM
L1_007_000M1_scaffold_118_83
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(96566..96805)
DNA (240bp) protein (80aa)
Helix-turn-helix n=2 Tax=Ruminococcus RepID=D4L594_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CCX81024.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_118_84
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(96982..97407)
DNA (426bp) protein (142aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Putative Holliday junction resolvase n=2 Tax=Ruminococcus RepID=D4L593_9FIRM
conserved hypothetical protein TIGR00250
L1_007_000M1_scaffold_118_85
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

97644..99968
DNA (2325bp) protein (775aa)
Stage II sporulation protein E (SpoIIE) n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQH5_9FIRM
Stage II sporulation protein E (SpoIIE) {ECO:0000313|EMBL:CCX81029.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Stage II sporulation protein E (SpoIIE).
L1_007_000M1_scaffold_118_86
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(100283..100909)
DNA (627bp) protein (209aa)
Nuclear pore complex protein Nup153 n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DLF1_9FIRM
Nuclear pore complex protein Nup153 {ECO:0000313|EMBL:CCX81018.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_118_87
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

101072..101395
DNA (324bp) protein (108aa)
Transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYK0_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CCX81031.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
HipB2; transcriptional regulator
L1_007_000M1_scaffold_118_88
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

101615..102556
DNA (942bp) protein (314aa)
Fic/DOC family n=2 Tax=root RepID=R5DLG8_9FIRM
Fic/DOC family {ECO:0000313|EMBL:CCX81033.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Fic/DOC family.
L1_007_000M1_scaffold_118_89
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

103142..103567
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2B1H7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHJ34534.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
Displaying items 61-89 of 89 in total

View Taxonomy