ggKbase home page

L1_007_000M1_scaffold_174

Search features with annotation key words

Displaying items 31-55 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_174_31
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(47221..47937)
DNA (717bp) protein (239aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018107}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018107};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
4-hydroxy-tetrahydrodipicolinate reductase n=3 Tax=Parabacteroides RepID=A7A9V9_9PORP
dihydrodipicolinate reductase
L1_007_000M1_scaffold_174_32
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

48049..49332
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WU39_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14863.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_174_33
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

49431..51347
DNA (1917bp) protein (639aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X6W0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14864.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_174_34
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

51286..52173
DNA (888bp) protein (296aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6B2J8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14865.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_174_35
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(52177..53229)
DNA (1053bp) protein (351aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=3 Tax=Parabacteroides RepID=A7A9W3_9PORP
two-component system sensor histidine kinase
L1_007_000M1_scaffold_174_36
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(53242..54576)
DNA (1335bp) protein (445aa)
Sigma-54 interaction domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y8Y6_9PORP
Sigma-54 interaction domain protein {ECO:0000313|EMBL:CDD14867.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
two-component system response regulator
L1_007_000M1_scaffold_174_37
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

54857..55411
DNA (555bp) protein (185aa)
RNA polymerase sigma-70 factor n=4 Tax=Parabacteroides RepID=A7A9W6_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:EDN88423.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
RNA polymerase ECF-type sigma factor
L1_007_000M1_scaffold_174_38
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

55478..56470
DNA (993bp) protein (331aa)
Sigma factor regulatory protein FecR/PupR family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X6W5_9PORP
Sigma factor regulatory protein FecR/PupR family {ECO:0000313|EMBL:CDD14869.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
anti-sigma factor
L1_007_000M1_scaffold_174_39
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

56628..59966
DNA (3339bp) protein (1113aa)
TonB-linked outer membrane protein, SusC/RagA family n=3 Tax=Parabacteroides RepID=A7A9W8_9PORP
TonB-linked outer membrane protein SusC/RagA family {ECO:0000313|EMBL:CDD14870.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
TonB-dependent receptor plug
L1_007_000M1_scaffold_174_40
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

59979..61682
DNA (1704bp) protein (568aa)
SusD family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XEV8_9PORP
SusD family protein {ECO:0000313|EMBL:CDD14871.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
RagB/SusD domain protein
L1_007_000M1_scaffold_174_41
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

61770..64304
DNA (2535bp) protein (845aa)
alpha-L-fucosidase (EC:3.2.1.51)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y8Z1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14872.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L1_007_000M1_scaffold_174_42
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

64315..65757
DNA (1443bp) protein (481aa)
sulfatase (EC:3.1.6.-)
Arylsulfatase n=3 Tax=Parabacteroides RepID=A7A9X1_9PORP
Arylsulfatase {ECO:0000313|EMBL:EDN88428.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L1_007_000M1_scaffold_174_43
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

65838..66881
DNA (1044bp) protein (348aa)
Kinase, PfkB family n=4 Tax=Parabacteroides RepID=A7A9X2_9PORP
Kinase PfkB family {ECO:0000313|EMBL:CDD14874.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
gluconate kinase
L1_007_000M1_scaffold_174_44
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

66922..67590
DNA (669bp) protein (223aa)
keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase (EC:4.1.2.14 4.1.3.16)
KDPG and KHG aldolase n=4 Tax=Parabacteroides RepID=A7A9X3_9PORP
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase {ECO:0000313|EMBL:EKN13161.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L1_007_000M1_scaffold_174_45
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

67673..69076
DNA (1404bp) protein (468aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glucuronate isomerase (EC:5.3.1.12)
Uronate isomerase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XEW3_9PORP
L1_007_000M1_scaffold_174_46
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(69139..72732)
DNA (3594bp) protein (1198aa)
Tetratricopeptide repeat protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y8Z5_9PORP
Tetratricopeptide repeat protein {ECO:0000313|EMBL:CDD14877.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_174_47
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(72741..73544)
DNA (804bp) protein (268aa)
ABC 3 transport family protein n=4 Tax=Parabacteroides RepID=A7A9X6_9PORP
ABC 3 transport family protein {ECO:0000313|EMBL:CDD14878.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
zinc ABC transporter permease
L1_007_000M1_scaffold_174_48
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(73678..74100)
DNA (423bp) protein (141aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5ZPC7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14879.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_174_49
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(74155..75402)
DNA (1248bp) protein (416aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WZZ4_9PORP
3-phosphoshikimate 1-carboxyvinyltransferase
L1_007_000M1_scaffold_174_50
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(75502..76620)
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YHP9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN13167.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
glycosyl hydrolase family protein
L1_007_000M1_scaffold_174_51
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(76630..78387)
DNA (1758bp) protein (586aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y901_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14882.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L1_007_000M1_scaffold_174_52
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(78381..79988)
DNA (1608bp) protein (536aa)
SusD family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WU62_9PORP
SusD family protein {ECO:0000313|EMBL:CDD14883.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
RagB/SusD domain-containing protein
L1_007_000M1_scaffold_174_53
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(80008..83310)
DNA (3303bp) protein (1101aa)
TonB-linked outer membrane protein SusC/RagA family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X6Y1_9PORP
TonB-linked outer membrane protein SusC/RagA family {ECO:0000313|EMBL:CDD14884.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
membrane protein
L1_007_000M1_scaffold_174_54
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(83442..84425)
DNA (984bp) protein (328aa)
Sigma factor regulatory protein, FecR/PupR family n=3 Tax=Parabacteroides RepID=A7A9Y4_9PORP
Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:EDN88441.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
anti-sigma factor
L1_007_000M1_scaffold_174_55
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(84489..85022)
DNA (534bp) protein (178aa)
RNA polymerase sigma-70 factor n=3 Tax=Parabacteroides RepID=A7A9Y5_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:CDD14886.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
RNA polymerase ECF-type sigma factor
Displaying items 31-55 of 55 in total

View Taxonomy