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L1_007_000M1_scaffold_3588

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_3588_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12..386)
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLR5_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L12P
L1_007_000M1_scaffold_3588_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(479..991)
DNA (513bp) protein (171aa)
50S ribosomal protein L10 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLR6_9FIRM
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L10P
L1_007_000M1_scaffold_3588_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1240..1932)
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLR7_9FIRM
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L1P
L1_007_000M1_scaffold_3588_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2453..2758)
DNA (306bp) protein (102aa)
Transcription termination/antitermination protein NusG n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLR9_9FIRM
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcription antitermination protein nusG
L1_007_000M1_scaffold_3588_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2973..3266)
DNA (294bp) protein (98aa)
Protein translocase subunit SecE n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS0_9FIRM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
preprotein translocase, SecE subunit, bacterial
L1_007_000M1_scaffold_3588_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3564..4439)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76985.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_3588_7
unknown

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4523..4705
DNA (183bp) protein (61aa)

This feature has no annotations

L1_007_000M1_scaffold_3588_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4819..5634)
DNA (816bp) protein (272aa)
predicted 23S rRNA m(1)G methyltransferase (EC:2.1.1.51)
Methyltransferase domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJN5_9FIRM
Methyltransferase domain protein {ECO:0000313|EMBL:EFB76983.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_3588_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5631..6182)
DNA (552bp) protein (184aa)
Superfamily II DNA and RNA helicases (EC:3.6.1.-)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76982.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_3588_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6197..7486)
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJN3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76981.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_3588_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7514..8167)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76980.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted NADH:ubiquinone oxidoreductase, subunit RnfA
L1_007_000M1_scaffold_3588_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8148..9422)
DNA (1275bp) protein (425aa)
Na(+)-translocating NADH-quinone reductase subunit D domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJN1_9FIRM
Na(+)-translocating NADH-quinone reductase subunit D domain protein {ECO:0000313|EMBL:EFB76979.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted NADH:ubiquinone oxidoreductase, subunit RnfE
L1_007_000M1_scaffold_3588_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9403..10422)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJN0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76978.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted NADH:ubiquinone oxidoreductase, subunit RnfD
L1_007_000M1_scaffold_3588_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10437..11090)
DNA (654bp) protein (218aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJM9_9FIRM
L1_007_000M1_scaffold_3588_15
unknown

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comp(11257..11367)
DNA (111bp) protein (37aa)

This feature has no annotations

L1_007_000M1_scaffold_3588_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11374..12312)
DNA (939bp) protein (313aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB76974.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB76974.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJM6_9FIRM
glycosyl transferase 2
L1_007_000M1_scaffold_3588_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12330..12677)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76973.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Displaying 17 items

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