ggKbase home page

L1_007_000M1_scaffold_2448

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_2448_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..798)
DNA (798bp) protein (266aa)
NADP-specific glutamate dehydrogenase (EC:1.4.1.4)
Glutamate dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIU8_9FIRM
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2448_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(978..2375)
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIU5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77454.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2448_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2441..3772)
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIU5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77454.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2448_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3952..4785)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIU3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77452.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2448_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4782..6131)
DNA (1350bp) protein (450aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIU2_9FIRM
Signal transduction histidine kinase
L1_007_000M1_scaffold_2448_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6347..7009)
DNA (663bp) protein (221aa)
Response regulator receiver domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIU1_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EFB77449.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
two component transcriptional regulator
L1_007_000M1_scaffold_2448_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7163..9427
DNA (2265bp) protein (755aa)
Glycosyl hydrolase family 3 N-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIT9_9FIRM
Glycosyl hydrolase family 3 N-terminal domain protein {ECO:0000313|EMBL:EFB77448.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glycoside hydrolase family 3
L1_007_000M1_scaffold_2448_8
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

9477..9797
DNA (321bp) protein (107aa)
Thioredoxin n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DZ19_9FIRM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
thioredoxin
L1_007_000M1_scaffold_2448_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10038..10928)
DNA (891bp) protein (297aa)
GIY-YIG catalytic domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRI9_9FIRM
GIY-YIG catalytic domain protein {ECO:0000313|EMBL:EFB74715.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
phosphinothricin acetyltransferase
L1_007_000M1_scaffold_2448_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10925..11758)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRI8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74714.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Uncharacterized conserved protein related to MYG1 family
L1_007_000M1_scaffold_2448_11
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(11789..12334)
DNA (546bp) protein (182aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Phosphodiesterase MJ0936 family n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IKT5_9FIRM
phosphoesterase, MJ0936 family
L1_007_000M1_scaffold_2448_12
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12466..13383)
DNA (918bp) protein (306aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Quinolinate synthetase complex, A subunit n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDY5_9FIRM
quinolinate synthetase A
L1_007_000M1_scaffold_2448_13
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13416..13937)
DNA (522bp) protein (174aa)
Predicted small molecule binding protein (Contains 3H domain) n=1 Tax=Coprococcus catus GD/7 RepID=D4J516_9FIRM
Predicted small molecule binding protein (contains 3H domain)
Predicted small molecule binding protein (Contains 3H domain) {ECO:0000313|EMBL:CBK79437.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L1_007_000M1_scaffold_2448_14
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13937..14803)
DNA (867bp) protein (289aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide diphosphorylase n=2 Tax=Clostridiales RepID=R7GR13_9FIRM
Nicotinate-nucleotide diphosphorylase {ECO:0000313|EMBL:ERI92707.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
L1_007_000M1_scaffold_2448_15
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14796..16088)
DNA (1293bp) protein (431aa)
Aspartate oxidase (EC:1.4.3.16)
Aspartate oxidase {ECO:0000313|EMBL:CBK79435.1}; EC=1.4.3.16 {ECO:0000313|EMBL:CBK79435.1};; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
Aspartate oxidase n=1 Tax=Coprococcus catus GD/7 RepID=D4J514_9FIRM
L1_007_000M1_scaffold_2448_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16412..17725)
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRK6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74731.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_2448_17

Not on your lists

comp(17741..18553)
DNA (813bp) protein (271aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1U2W5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC74269.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Protein of unknown function, DUF624.
L1_007_000M1_scaffold_2448_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18847..19605
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRK4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74730.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_2448_19
unknown

Not on your lists

19602..19775
DNA (174bp) protein (58aa)

This feature has no annotations

L1_007_000M1_scaffold_2448_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19872..20519
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRK2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74728.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2448_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20780..21838)
DNA (1059bp) protein (353aa)
pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric (EC:1.2.7.-)
Uncharacterized protein (Fragment) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRP2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74583.1}; Flags: Fragment;; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Displaying 21 items

View Taxonomy