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L1_008_000G1_scaffold_4

Search features with annotation key words

Displaying items 31-60 of 364 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_4_31
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33493..35340
DNA (1848bp) protein (616aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
two component system histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S657_9BIFI
L1_008_000G1_scaffold_4_32
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35505..35894
DNA (390bp) protein (130aa)
Cold-shock DNA-binding domain protein n=3 Tax=Bifidobacterium RepID=B6XX10_9BIFI
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:EFM41819.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
cold-shock protein
L1_008_000G1_scaffold_4_33
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35898..37031
DNA (1134bp) protein (378aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7V3_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM41818.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
L1_008_000G1_scaffold_4_34
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37170..38189)
DNA (1020bp) protein (340aa)
UspA domain protein n=3 Tax=Bifidobacterium dentium RepID=D2Q9F4_BIFDB
uspA; UspA domain protein
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26740.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L1_008_000G1_scaffold_4_35
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38329..40911
DNA (2583bp) protein (861aa)
ATPase family associated with various cellular activities (AAA) n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S653_9BIFI
Clp amino terminal domain protein {ECO:0000313|EMBL:ETO97801.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
clpC; Negative regulator of genetic competence clpC/mecB
L1_008_000G1_scaffold_4_36
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40980..41120
DNA (141bp) protein (47aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27679 RepID=E0Q7V0_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM41815.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
L1_008_000G1_scaffold_4_37
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(41086..42081)
DNA (996bp) protein (332aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7U9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM41814.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
L1_008_000G1_scaffold_4_38
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(42532..43968)
DNA (1437bp) protein (479aa)
ATPase involved in DNA repair n=2 Tax=Bifidobacterium dentium RepID=D2Q9F7_BIFDB
DNA repair ATPase
ATPase involved in DNA repair {ECO:0000313|EMBL:ADB09443.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L1_008_000G1_scaffold_4_39
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


44086..45477
DNA (1392bp) protein (464aa)
Histidine--tRNA ligase {ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|SAAS:SAAS00043629};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Bifidobacterium dentium JCVIHMP022 RepID=E1NAV0_9BIFI
L1_008_000G1_scaffold_4_40
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


45540..47339
DNA (1800bp) protein (600aa)
Aspartate--tRNA ligase {ECO:0000313|EMBL:EFM41810.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EFM41810.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Aspartate--tRNA ligase n=3 Tax=Bifidobacterium dentium RepID=B1S647_9BIFI
aspartyl-tRNA synthetase
L1_008_000G1_scaffold_4_41
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

47495..49039
DNA (1545bp) protein (515aa)
ABC transporter permease (EC:4.2.1.91)
Permease protein of ABC transporter system n=4 Tax=Bifidobacterium dentium RepID=D2Q9G0_BIFDB
ABC transporter, permease protein {ECO:0000313|EMBL:EFM41809.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
L1_008_000G1_scaffold_4_42
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

49036..49830
DNA (795bp) protein (265aa)
glutamate transport ATP-binding protein gluA (EC:3.6.3.31)
Glutamate transport ATP-binding protein gluA n=2 Tax=Bifidobacterium dentium RepID=D2Q9G1_BIFDB
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26747.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L1_008_000G1_scaffold_4_43
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

50151..50948
DNA (798bp) protein (266aa)
ABC transporter, ATP-binding protein n=3 Tax=Bifidobacterium dentium RepID=E0Q7U1_9BIFI
Glutamate ABC transporter, ATP-binding protein GluA {ECO:0000313|EMBL:ETO97822.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
glutamate ABC transporter ATP-binding protein
L1_008_000G1_scaffold_4_44
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

51011..51823
DNA (813bp) protein (271aa)
ABC transporter, substrate-binding protein, family 3 n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S642_9BIFI
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26749.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
ABC transporter substrate-binding protein
L1_008_000G1_scaffold_4_45
Bifidobacterium moukalabense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

51826..52503
DNA (678bp) protein (226aa)
ABC transporter, permease protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7T9_9BIFI
ABC transporter permease {ECO:0000313|EMBL:ETY71169.1}; TaxID=1435051 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium moukalabense DSM 27321.;"
gluC; glutamate transporter permease gluC
L1_008_000G1_scaffold_4_46
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

52510..53643
DNA (1134bp) protein (378aa)
Glutamate transport system permease protein GluD n=2 Tax=Bifidobacterium dentium RepID=D2Q9G6_BIFDB
gluD; glutamate transporter permease gluD
Glutamate transport system permease protein GluD {ECO:0000313|EMBL:ADB09452.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L1_008_000G1_scaffold_4_47
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

53736..54731
DNA (996bp) protein (332aa)
Polyphosphate:nucleotide phosphotransferase, PPK2 family {ECO:0000313|EMBL:EFM41802.1}; EC=2.7.4.- {ECO:0000313|EMBL:EFM41802.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Polyphosphate:nucleotide phosphotransferase, PPK2 family n=2 Tax=Bifidobacterium dentium RepID=E0Q7T7_9BIFI
hypothetical protein
L1_008_000G1_scaffold_4_48
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(54743..57292)
DNA (2550bp) protein (850aa)
DEAD/DEAH box helicase n=2 Tax=Bifidobacterium dentium RepID=E0Q7T6_9BIFI
DEAD/DEAH box helicase {ECO:0000313|EMBL:EFM41801.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
DEAD/DEAH box-like helicase
L1_008_000G1_scaffold_4_49
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

57377..58753
DNA (1377bp) protein (459aa)
ATPase AAA (EC:3.4.21.53)
ATPase, AAA family n=2 Tax=Bifidobacterium dentium RepID=E0Q7T5_9BIFI
MgsA AAA+ ATPase family protein {ECO:0000313|EMBL:ETO97813.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L1_008_000G1_scaffold_4_50
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

58880..60397
DNA (1518bp) protein (506aa)
Transporter, major facilitator family protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7T4_9BIFI
Transporter, major facilitator family protein {ECO:0000313|EMBL:EFM41799.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
transporter
L1_008_000G1_scaffold_4_51
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

60499..62157
DNA (1659bp) protein (553aa)
Solute binding protein of ABC transporter system for peptides n=2 Tax=Bifidobacterium dentium RepID=D2Q9H1_BIFDB
peptides ABC transporter substrate-binding protein
Solute binding protein of ABC transporter system for peptides {ECO:0000313|EMBL:ADB09457.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L1_008_000G1_scaffold_4_52
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

62264..62884
DNA (621bp) protein (207aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=367928 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC; 11814 / E194a).;"
ATP-dependent Clp protease proteolytic subunit n=5 Tax=Bifidobacterium RepID=A1A0Y5_BIFAA
clp1; ATP-dependent Clp protease proteolytic subunit 2
L1_008_000G1_scaffold_4_53
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

62887..63588
DNA (702bp) protein (234aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
clp2; ATP-dependent Clp protease proteolytic subunit 2 (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=2 Tax=Bifidobacterium dentium RepID=E0Q7T1_9BIFI
L1_008_000G1_scaffold_4_54
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

63693..65009
DNA (1317bp) protein (439aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=2 Tax=Bifidobacterium dentium RepID=E0Q7T0_9BIFI
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
clpX; ATP-dependent Clp protease ATP-binding subunit clpX
L1_008_000G1_scaffold_4_55
unknown

Not on your lists

comp(65253..65429)
DNA (177bp) protein (59aa)

This feature has no annotations

L1_008_000G1_scaffold_4_56
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

65431..66810
DNA (1380bp) protein (460aa)
Na(+)/H(+) antiporter NhaA n=3 Tax=Bifidobacterium dentium RepID=B1S631_9BIFI
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
nhaA; Na+/H+ antiporter NhaA
L1_008_000G1_scaffold_4_57
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(66845..67516)
DNA (672bp) protein (224aa)
O-methyltransferase n=3 Tax=Bifidobacterium dentium RepID=B1S630_9BIFI
O-methyltransferase {ECO:0000313|EMBL:EFM41793.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
safC; Caffeoyl-CoA O-methyltransferase
L1_008_000G1_scaffold_4_58
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(67522..68448)
DNA (927bp) protein (309aa)
Succinate dehydrogenase and fumarate reductase iron-sulfur protein {ECO:0000313|EMBL:EFM41792.1}; EC=1.3.99.1 {ECO:0000313|EMBL:EFM41792.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
sdhB; succinate dehydrogenase iron-sulfur protein (EC:1.3.99.1)
Succinate dehydrogenase and fumarate reductase iron-sulfur protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7S7_9BIFI
L1_008_000G1_scaffold_4_59
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(68508..70367)
DNA (1860bp) protein (620aa)
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.4.3.16)
SdhA Succinate dehydrogenase flavoprotein subunit n=2 Tax=Bifidobacterium dentium RepID=D2Q9H8_BIFDB
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26763.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L1_008_000G1_scaffold_4_60
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(70427..71776)
DNA (1350bp) protein (450aa)
Smf protein n=4 Tax=Bifidobacterium dentium RepID=D2Q9H9_BIFDB
DNA protecting protein DprA {ECO:0000313|EMBL:EFM41790.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
smf; Smf protein
Displaying items 31-60 of 364 in total

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