ggKbase home page

L1_008_000G1_scaffold_21078_1

Organism: L1_008_000G1_public_UNK

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 19 / 38 MC: 18
Location: comp(20..727)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RHR1_CLOPF similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 235.0
  • Bit_score: 456
  • Evalue 8.90e-126
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 235.0
  • Bit_score: 456
  • Evalue 1.30e-125
sigE; sporulation sigma factor SigE similarity KEGG
DB: KEGG
  • Identity: 99.1
  • Coverage: 235.0
  • Bit_score: 455
  • Evalue 7.30e-126

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Clostridium perfringens → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 708
ATGTTAAATATAAGACTTTTGCTTAATAAGTTATTTACTAAATTAGATATTATGGTAGAACCAATTTATTATATTGGGGGGAATGATGTTCTTCCAGCACCTCTTAGTAAGGAAGAGGAAGAGGAGTTAGTTAACAAATTAGGGGAGAATGATGAAGCTATTAGAAGTATTCTTATTGAGAGAAATTTAAGACTAGTTGTATATATAGCTAGAAAATTTGAGAATACTGGTGTAGGAGTTGAGGATTTAATTTCTGTAGGAACAATTGGACTTATAAAGGCAGTAAATACATTTAATCCTGAAAAAAAGATAAAGCTTGCAACCTATGCATCAAGATGTATAGAAAATGAAATTCTTATGTATTTAAGGAGAAATAGCAAGGTTAAAGCTGAGATATCATTTTATGAGCCCTTAAATATAGATTGGGATGGAAATGAACTTTTACTTTCAGATATACTTGGCACAGATGATGATATTGTTTACAATATGATAGAAGATGAAGTTGACAAGGAATTATTATTTACTGCAATGAAGAATCTTTCAAATAGAGAAAAAGAAATTGTTGAATTAAGATTTGGACTATGTGGATATAAAGAAAAAACTCAAAAGGAAGTAGCTGATATGCTAGGAATATCTCAATCTTATATTTCAAGATTAGAGAAGAAAATTATAAAAAGATTAAAGAAAGAAATTAACAAAATGATTTAA
PROTEIN sequence
Length: 236
MLNIRLLLNKLFTKLDIMVEPIYYIGGNDVLPAPLSKEEEEELVNKLGENDEAIRSILIERNLRLVVYIARKFENTGVGVEDLISVGTIGLIKAVNTFNPEKKIKLATYASRCIENEILMYLRRNSKVKAEISFYEPLNIDWDGNELLLSDILGTDDDIVYNMIEDEVDKELLFTAMKNLSNREKEIVELRFGLCGYKEKTQKEVADMLGISQSYISRLEKKIIKRLKKEINKMI*