ggKbase home page

L1_008_000G1_scaffold_16_45

Organism: dasL1_008_000G1_concoct_76_fa

near complete RP 47 / 55 MC: 1 BSCG 50 / 51 ASCG 13 / 38
Location: 59661..60602

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.2
  • Coverage: 313.0
  • Bit_score: 585
  • Evalue 3.10e-164
tRNA pseudouridine synthase B n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W716_ATOPD similarity UNIREF
DB: UNIREF100
  • Identity: 89.5
  • Coverage: 313.0
  • Bit_score: 550
  • Evalue 1.00e-153
tRNA pseudouridine synthase B similarity KEGG
DB: KEGG
  • Identity: 89.5
  • Coverage: 313.0
  • Bit_score: 550
  • Evalue 2.90e-154

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Atopobium sp. ICM42b → Atopobium → Coriobacteriales → Coriobacteriia → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 942
GTGAAGCGAGGAGCTAGTGGAATTAACGCACTTATTGCTGTTGACAAACCGCTTGGGCTGACCAGCCATGACGTGGTTTCTCGTGTTCGCCGTGCATTTGGCGAGAAACGCGTGGGGCATGCAGGCACTTTGGATCCTAATGCAAGTGGCGTGTTGGTAGTGGGCATTGGACTTGCTACAAAGCTGTTGGGCCTCCTGACGCTGGACCGAAAGGGGTATGTGGCCGACATCTCGTTTGGCACCCGCACCTCAACCGATGATGCAGACGGGCAGGTCGTAGCCACTGCTGCTGTCCCAGAAAATCTGTGCGATGAAGAGTTTGCTCGTGCTGCATGCGGAAGGCTGGTGGGTACGGTAGACCAGCTTCCACCTGCAGTTTCTGCAATCTCTGTTGATGGCCAACGTGCCTATCAGCTTGTTCGTGAAGGTAAGACGCCAGAGCTTGCGGCTCGTAGAGTCTCTATTTACGACGCTACTCTTTTGGCAGTGCGCAAACCTTCTACTACGGATGAATCACTGGTATGGACGGTTGCGTTTGATGTTTCAAAAGGCACCTACATTAGAAGTATTGCTCGAGACCTTGGTCAGTCTCTTGGAACAGAGGCTCATATTAGTGGACTGAGAAGGACGTTCTCTGGTCCAATCACGCTCGGTAGCTGCGCTTTATTAGAAGAGCTTGAACAAAGCCCAGCTCAGGTGCTTGAAGCTAAACGCCTTAATCCAACTGAGGTTCTGGGATACCCTGTGCACAGGTTGACTGCAGCAGAATACAAGTATGTTGAGGTTGGAAAACGTTTTGGTATTCCGGAAGATCTCTCTGAGATTGCTCATAACTCGCTGGTCAGCCTTGTGTGGAATGAAGCTCTCGTAGGAATTTGGACAAGGCAGGGCTCCTGCCTTGTCTGCCAGACAAACTTCTCTCAAGGTATTTTGTGTAAGTAA
PROTEIN sequence
Length: 314
VKRGASGINALIAVDKPLGLTSHDVVSRVRRAFGEKRVGHAGTLDPNASGVLVVGIGLATKLLGLLTLDRKGYVADISFGTRTSTDDADGQVVATAAVPENLCDEEFARAACGRLVGTVDQLPPAVSAISVDGQRAYQLVREGKTPELAARRVSIYDATLLAVRKPSTTDESLVWTVAFDVSKGTYIRSIARDLGQSLGTEAHISGLRRTFSGPITLGSCALLEELEQSPAQVLEAKRLNPTEVLGYPVHRLTAAEYKYVEVGKRFGIPEDLSEIAHNSLVSLVWNEALVGIWTRQGSCLVCQTNFSQGILCK*