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L1_008_000M1_scaffold_43_15

Organism: L1_008_000M1_public_UNK

megabin RP 52 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 20 / 38 MC: 16
Location: comp(12321..15920)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.7
  • Coverage: 1199.0
  • Bit_score: 2362
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHD2_BIFBI similarity UNIREF
DB: UNIREF100
  • Identity: 99.7
  • Coverage: 1199.0
  • Bit_score: 2362
  • Evalue 0.0
mfd; transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 99.7
  • Coverage: 1199.0
  • Bit_score: 2362
  • Evalue 0.0

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Taxonomy

Bifidobacterium bifidum → Bifidobacterium → Bifidobacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 3600
ATGGCCGCTGAGCAGGGACGCGCGCGCGGCAAAGCGTCCGCCGCCACGGCCACACGCGTCCAGAACGCGCTGATCGACGGCTCCCTGTGCGGCATCCTCGAACGGCTCGATGAGGATCCGGCATTCCATCGGCTCGTCAGCGGCGGCATGAGCATCGCCGACGACAAGGACATCGCCCCGATCATCACCGTGGGCACCCCGGACGGGTTGCGCCCGGCCATCGCCGCAGCGCAGGCGGAACACACCCCCGTCGTCCTGGTCGTGGCCTCCAGCCGCGAGGCCGAGGACACCGTGAACGCGCTGCGGTCGTGGTACGACGGCGACCCGAACGACATCGCACAACTGGAGGCCTGGGAGACGCTGCCCCACGAGCGGCTCAGTCCCCGTGCCGACACCGTGGCGAGCCGCATGGCCGTATTCCGCAGGCTCACGCACCCCAGCGACACCAATCCGATGTTCGGACCGATCCGCATACTTGTCATGCCGGTGCGTTCGCTGATCCAGCCCGTTGTCAAGGGGCTCGGCGACGTCGATCCGCTCGTCTTCACGCAAGGCGAGGAGCTGCCTCTCGACGACGTGTCGCGCCGACTGGTTGAGAACGCCTACACGCGCGTCGACCTGGTGATGGACCGTGGCGAGTTCGCGGTGCGCGGCGGCATCATCGACGTCTTTCCCCCAACCGCGCCACATCCGGTGCGCATCGAGTTCTTCGGTGACGAGATCGACTCCATCCGAGAATTCCACGCGTCCGACCAGCGCACCTACGGCGAGGGCGTCCGCACGATCTGGGCGACACCCTGCCGGGAACTGCAGCTCACCGACGCCGTGCGGGACCGGGCGAAACGGCTCATCGGGCAGATTCCGAATGCCGACGACATGCTGGAGTCCATCGCGAACGCGATTCCCATCGAAGGCATGGAATCCCTGATGCCCGCGCTCATCGACGACATGGAACCCGTGACCGGCATGCTCGACAGGCATGCCGTCATCATGCTCGCCGACCCGGAAAAGCTGCGCCGCGCGGCGGACGACCTCTCGAAAACCGCGAACGAGTTCCTCGCCGCCAGCTGGCATGTCGCCGCGGCCGGGCACGGTGCCGGAGCTCCCATCAGCTTCGACCAGGCCAGCTTCCTCGACTACGAGGAGACCATCAACTCGCTCGCATACTCCAGCCACGACGTGTGGAACCTCACCAGTTTCGGCGTGGACGCCAGCCGCCCGAACCACGTGCAGCTCGCCGCCGGCAACCCGGGCGAATACCGCGGTGACGAGACGAAGGCCGCGGCCGGCATCGAGGGGCTCATCGACGCAGGGTACCAGGTCACCGTCACCGCGGCCGCGCAGGGCACGCTCGCACGATTGAAGCGAGCCATCAACGAGACCGGCATCGCCTCGTTCGACGTCATCCGCTCCCAGGCCATCGACGGGTTCATCGACACGGCGGCGAAGACCGCGCTGCTCACCGAACGCGACCTGACCGGACGGTCCAGTGCGGCCGGTCAGGCGAAGACCCCCAAGCGCCGCCGCAAGGCAATCGACCTGATGGAGCTCAAAGCCGGAGACTACGTGGTCCATGAGCAGCACGGCATCGGCCGTTTCCTGGAGATGCGGCAGCGCACCATCGGCACCGGGGCGAACAAGACCACGCGCGAATACCTTGTCATCGAATACGCGCCCAGCAAGCGCGGCGCCCCGGCCGACAAGCTGTTCATCCCCACCGACCAGCTGGATCTGATCAGCAAATACATCGGCGCGGAGGCCCCCAAGCTCAACAAGCTCGGCGGCTCCGACTGGGCCGCAACCAAGGCGAAGGCGCGCAAGCACGTGCACGAGATCGCCGAGGACCTGGTGAAGCTGTACTCTGCCAGGCAGCGCACCAAGGGGTTCGCGTTCAGCCCCGACACGCCATGGCAGAAGGAGCTGGAGGACGCGTTCCCGTATCAGGAGACGACGGACCAGCTCACCACCATCGATGATGTCAAGTCCGACATGGAGAAACCAGTGCCGATGGATCGCCTCATCTGCGGCGACGTCGGCTTCGGCAAGACCGAGATCGCCGTGAGAGCAGCGTTCAAGGCCATACAGGACGGCAAGCAGGTGGCCGTCCTCGTGCCGACTACGCTGCTCGTGCAGCAGCATCACGAGACGTTCACCGAACGGTACGAGGGCTTCCCGGTCACCGTCGCGGCCATGAGCCGCTTCCAGACGACCAAGGAGATCAACGAGACCATCGAGGGACTGGAGACGGGTGGCGTCGACGTCGTCATCGGCACCCACAAGCTGCTCAACCCCAAGATCAAGTTCAAGGATCTCGGCCTTGTCATCATCGACGAGGAGCAGCGGTTCGGCGTCGAGCACAAGGAGACGCTCAAGGCGCTGCGCACCAATGTGGACGTGCTCTCGCTGTCCGCCACGCCTATCCCGCGCACGCTGGAGATGGCGGTGACCGGCATCCGTGAGATGTCTACGCTCGCCACCCCGCCCGAGGACCGGCTTCCCGTGCTCACCTACGTGGGCGCGTACGAGGACGCTCAGGTCACGGCCGCGGTCCGGCGCGAACTGCTGCGCGGCGGACAGGTGTTCTACGTGCACAACCGCGTGCAGGACATCGCGAAGACGGCCGCGAAGATCCACGAGCTCGTCCCCGAGGCGCGAGTCGGCATCGCTCACGGCAAGATGGGGGAGAAGCAGCTCGACGGCGTAATCCGCGACTTCTGGCATCGCGACATCGACGTGCTCGTATGCACGACGATCATCGAGACCGGACTCGACATCTCCAACGCGAACACGCTGATCGTAGACCACGCCGACCGGTTCGGCCTCTCCCAGCTGCACCAGCTGCGCGGGCGTGTCGGCCGCGGCCGCGAACGCGCGTACGCCTACTTCCTGTACGACCCGTCCAAGCCGATGACCCAGCAGTCGCACGACCGCCTCGCCACCATCGCGCAGAACACGGCGCTCGGAAGCGGCTTCGACGTCGCCATGAAGGACCTCGAACTGCGCGGCACCGGCAACCTGCTGGGCGACGAACAGTCCGGGCACATCGAGGGCGTCGGCTTCGACCTGTACGTGCGCATGGTCTCGGAAGCCGTCGAACAGTACAAGGAGCCGGAGCGGACCGAGCCGGTCGCGGTCACCATCGACCTGCCCATCGAAGCGTCCATCCCGGTGGACTACATCGATTCCGACAAGCTGCGGCTCGAAGCATACCGGAAACTGGCCGCTTCGCGCACCGATGAGGACCTCAAGGAACTCGCCGACGAACTCACGGATCGCTACGGCAAACTGCCGGAGGAGTTCGAGACGCTGTTCGGCGTGGCCCGCCTGCGCATGAAGGCGCGGGAACTCGGCATATCGGAGATCGTCGCGCAGGGCAAGAACGTGCGCGTCGGCAAGATCGACCCGCCCGAATCGATGCAGATGCGCATCAACCGCATCTACCGCGGGGCGCAATACCGGCCGGTCACGCACACATACCTGATCCCCGCGCCGTTCGCGGGCACGCTCGGCGGCAAACCGATGCCGGGCGATCAGGTCATGGACTGGGTGAGCGACCTGCTGCACGACTTCGCATGGAAGCCGCAACCGAGGAAGGCATGA
PROTEIN sequence
Length: 1200
MAAEQGRARGKASAATATRVQNALIDGSLCGILERLDEDPAFHRLVSGGMSIADDKDIAPIITVGTPDGLRPAIAAAQAEHTPVVLVVASSREAEDTVNALRSWYDGDPNDIAQLEAWETLPHERLSPRADTVASRMAVFRRLTHPSDTNPMFGPIRILVMPVRSLIQPVVKGLGDVDPLVFTQGEELPLDDVSRRLVENAYTRVDLVMDRGEFAVRGGIIDVFPPTAPHPVRIEFFGDEIDSIREFHASDQRTYGEGVRTIWATPCRELQLTDAVRDRAKRLIGQIPNADDMLESIANAIPIEGMESLMPALIDDMEPVTGMLDRHAVIMLADPEKLRRAADDLSKTANEFLAASWHVAAAGHGAGAPISFDQASFLDYEETINSLAYSSHDVWNLTSFGVDASRPNHVQLAAGNPGEYRGDETKAAAGIEGLIDAGYQVTVTAAAQGTLARLKRAINETGIASFDVIRSQAIDGFIDTAAKTALLTERDLTGRSSAAGQAKTPKRRRKAIDLMELKAGDYVVHEQHGIGRFLEMRQRTIGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLDLISKYIGAEAPKLNKLGGSDWAATKAKARKHVHEIAEDLVKLYSARQRTKGFAFSPDTPWQKELEDAFPYQETTDQLTTIDDVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHHETFTERYEGFPVTVAAMSRFQTTKEINETIEGLETGGVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAVRRELLRGGQVFYVHNRVQDIAKTAAKIHELVPEARVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPMTQQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAVEQYKEPERTEPVAVTIDLPIEASIPVDYIDSDKLRLEAYRKLAASRTDEDLKELADELTDRYGKLPEEFETLFGVARLRMKARELGISEIVAQGKNVRVGKIDPPESMQMRINRIYRGAQYRPVTHTYLIPAPFAGTLGGKPMPGDQVMDWVSDLLHDFAWKPQPRKA*