ggKbase home page
Advanced Search
Search Help

L1_008_000M1_scaffold_1459_17

Organism: L1_008_000M1_public_UNK

megabin RP 52 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 20 / 38 MC: 16
Location: comp(16525..20352)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.7
  • Coverage: 1279.0
  • Bit_score: 2300
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 77.7
  • Coverage: 1277.0
  • Bit_score: 1986
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL91_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 89.7
  • Coverage: 1279.0
  • Bit_score: 2300
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Subdoligranulum variabile → Subdoligranulum → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 3828
ATGGTAAAGGTCAAGCCCGTACAAAACGGTCGAACCTCCAGAATGAGCTTTTCCCGCATCAACGAAGTGATTGGCATGCCCAACCTCATCGAGATCCAGAAAAACTCTTATAACTGGTTCCTGGACGAGGGCCTGCGCGAAGTGTTCCACGACATTGACGCGATCGAGGATTACACCGGGAATCTCTCGCTGGAATTTGTCGATTACCGTCTGGACAAGCACCCCAAATATACCATTAAAGAATGTAAAGAGCGTGACGCAACGTATGCTGCGCCGCTTTATGTCACTGCGCGCCTGTTGAACAAGAGCACCGGCGAAGTGAAGGAACAGGAAATTTTCATGGGCGATTTCCCGCTCATGACGGATTCCGGCACTTTCATCTCCAACGGTGCAGAACGTGTTATCGTCAGCCAGCTGGTTCGTTCGCCCGGCGTGTTCTATGCTTCCAGCAAGGATCGTACCGGCAAGGACCTTTTCACCGCAACCATGAACCCCAACCGCGGCGCATGGCTGGAATACGAAACCGATTCTTCCGATGTATATTATGTGCGCATTGATAAAAACCGCAAGCTGCCGGTTACTACCTTCCTGCGCGCACTGGGTCTTGGCACCGATGAGCAGATCCGCCAGTACTTCGGCGATTCTGAACCCAAAATCAACGCTACCCTGGAAAAGGATATCACCCATTCCACAGAGGAAGCCCTGCTGGAGTGCTACCGCAAGCTGCGCCCCGGCGAGCCGCCGACGGTGGAAAGCTCCCGCAGCCACATCAACCTGCTGTTCTTTGATCCGCGCCGTTACGACCTGGCTCGTTTTGGCCGCTTCAAGATGAACAACAAGCTGTGCCTGTTCCGCCGTATTGCGGGCTATAAGACTGCCGAGGACATCATTGCCCCGCTGACCGGCGAACTGCTGGCCGCCAAGGGCGAGCGCATCAGCCACGAAAAGGCTGTTGAAATTGATAACGCCGGTGTTTCCCGCGTTACTGTTATCGTGGAGCGCAAGGGCCAGGATCCGGTCAATGTGATCGTGTTCTCCAACGGCTGTGTCGATGCCCAGAGTTTCTTCAGCTTTGACGTGAAGGAATGCGGCATCAACGAGCGCGCTTCCTTCGCCGAAATCCGTAAGATTCTGGATGCTACCTCCGATCCGGAAGAGCAGAAAGAACTGCTGACCAAGAATCATGATAAGCTCATCAGCCGCACCGTTACCGTTGACGATATCTTTGCTTCCGTCAACTACCTGCTGGGCCTTGACCATGGCATCGGCGTGACCGATGAAATCGACCACTTGGGCAACCGCCGCGTGCGCAGCGTTGGCGAATTGCTGCAGAACCAGTTCCGCATCGGCTTTGCCCGTATGGAGCGCGTTGTGCGCGAGCGCATGACCCTGCAGAACCAGGAATCCGGCGAGATCACCCCGCAGAGCCTGGTCAACATCCGCCCGGTCGTGGCTGCCATCCGTGAGTTCATCGGTTCCAGCCCACTGTCTCAGTTCATGGACCAGAACAACCCGCTGTCTGAGCTGACCCATAAGCGCCGTCTGTCCGCTTTGGGCCCCGGCGGTCTGTCCCGTGACCGCGCAGGCTTCGAAGTCCGCGACGTTCATTATACCCACTATGGCCGTCTGTGCCCGATTGAGACGCCCGAAGGTTCCAACATCGGCCTGATCTCCTATCTGGCATCTTTCGCCAAGATCAACAAGTACGGCTTCATTGAGGCACCTTACCGCCGCGTGGATAAAGAAACCGGCGTTGTTACCGATGAAGTTGTTTATATGCCCGCCGACGTTGAAGATGAATACATCGTGGCACAGGCCAACGAACCGCTGGACGAGAACAACCGCTTTGTCCGTTCCCGCGTTTCCGGCCGTCATCGCAACGACATTCAGGAATTTGCCCGTGAACAGGTCGATTTCATGGATGTTTCTCCGCGAATGATGGTTTCTGTGGCTACCGCTTGCATTCCCTTCCTGGAAAACGATGACTGTAACCGTGCTCTGATGGGCTCCAACATGCAGCGTCAGGCTGTGCCTCTGATGGTTACCCAGCGCTCTCTGGTTGCTACCGGCATGGAATACAAGGCTGCTACCGACTCCGGTGTCTGCGTGCTGGCTGCCCATGACGGCACCGTTGAAAGCGTTGACGCAGATAAGATCGTTGTCCGTCTGGAAGATGGCTCCGCCGATACCTATGAACTGATTAAGTTTATGCGCTCCAACCAGGGAACCTGCGTCAACCAGCGCCCCGCCGTCTATGTGGGCGATGTTGTCAAGAAGGGCGACGTTCTGGCTGACGGCCCCGCCACCAAGGACGGCGAGATCTCTCTGGGCAAGAACGCTCTGATCGGCTTCATGACCTGGGAAGGCTACAACTATGAGGACGCTGTTCTGCTGAACGAAAAGCTGGTCCGCGAGGATATCTACACCTCTATCCACATTGAGGAGTACGAGAGCGAAGCCCGCGATACCAAGCTGGGACCTGAAGAGGTGACCCGTGATATCCCCAACGTCGGCGATGATTCCCTGAAGGATCTGGACGACCGCGGCATTATCCGCATCGGCGCCGAAGTCAAGACCGGCGATATTCTGGTTGGTAAGGTTACCCCGAAGGGTGAAACCGAACTGACCGCCGAAGAGCGCCTGCTGCGCGCCATCTTTGGCGAAAAGGCACGGGAAGTACGTGATACCTCCCTGCGCGTTCCCCACGGTGCTTACGGCATTGTTGTGGATGTTAAGGTCTTTACCCCCGAAAACTCTGACGAGCTGCAGCCCGGCGTGCGCACCTGCGTGCGCGTCTATATCGCCCAGAAGCGTAAGATCAGCGTTGGTGATAAGATGGCAGGCCGTCACGGCAACAAGGGCGTTGTTTCCCGCATTCTGCCGCAGGAGGACATGCCGTTCCTGCCTGACGGTACCCCGCTGGATATCGTGCTGAACCCCCTGGGCGTTCCTTCCCGTATGAACATCGGTCAGGTGCTGGAAGTCAACCTTGGCTATGTTGCCAAGGCCCTTGGCTGGCATGTGCAGACCCCCGTGTTCGATGGCGCGCACGAATCCGATATCCGTGACTGCCTGGCCGAAGCCCGCGATAAGTGGCATGGCGACCATGCACCGGAATATCCCACCAAGCTGCCCCGCCTGATGGGCGATAAGGGCCACATCATTGATTTCAGCAAGATCGACCTGACCGATGATGGCAAGACCACCGTTTACGATGGCCGTACCGGCGAAAAGTTCCCCTCCAAGGTTACTGTCGGTTATATGTACTACCTCAAGCTGCATCACCTGGTTGATGATAAGATCCATGCCCGTTCCACCGGCCCGTACTCTCTGGTTACCCAGCAGCCTTTGGGCGGCAAGGCCCAGTTCGGCGGCCAGCGTTTCGGCGAAATGGAAGTTTGGGCTCTGGAAGCTTATGGCGCGGCTTACACCCTGCAGGAAATCCTGACTGTCAAGTCTGACGACGTTGTGGGCCGTGTCAAGACCTACGAAGCAATCGTCAAGGGCGAAGATGTGCCGAATCCGGGCATCCCCGAAAGCTTCCGCGTTATGCTGAAAGAACTGCAGAGCCTTGGCCTGGATATTGTTGTTCAGGATAAGGAAGGCAACGCTGTTGATATGCGTCAGGAATATGACGATGACGATGCCAACTTTGACAACAGCGATATCGGTGATAACGTTCTGCTGGAAAGCGAGCTGCAGGATGATTACAGTGTCAAGGATGCCGATGAAGGCTTTGACGACGACCTGGGCGATGAGGAGCCGGATGAAGCTTCTCTGGCACAGATCGAAGCCGACAATGGCGATGACCTGTTCGACGGTGAATGA
PROTEIN sequence
Length: 1276
MVKVKPVQNGRTSRMSFSRINEVIGMPNLIEIQKNSYNWFLDEGLREVFHDIDAIEDYTGNLSLEFVDYRLDKHPKYTIKECKERDATYAAPLYVTARLLNKSTGEVKEQEIFMGDFPLMTDSGTFISNGAERVIVSQLVRSPGVFYASSKDRTGKDLFTATMNPNRGAWLEYETDSSDVYYVRIDKNRKLPVTTFLRALGLGTDEQIRQYFGDSEPKINATLEKDITHSTEEALLECYRKLRPGEPPTVESSRSHINLLFFDPRRYDLARFGRFKMNNKLCLFRRIAGYKTAEDIIAPLTGELLAAKGERISHEKAVEIDNAGVSRVTVIVERKGQDPVNVIVFSNGCVDAQSFFSFDVKECGINERASFAEIRKILDATSDPEEQKELLTKNHDKLISRTVTVDDIFASVNYLLGLDHGIGVTDEIDHLGNRRVRSVGELLQNQFRIGFARMERVVRERMTLQNQESGEITPQSLVNIRPVVAAIREFIGSSPLSQFMDQNNPLSELTHKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRLCPIETPEGSNIGLISYLASFAKINKYGFIEAPYRRVDKETGVVTDEVVYMPADVEDEYIVAQANEPLDENNRFVRSRVSGRHRNDIQEFAREQVDFMDVSPRMMVSVATACIPFLENDDCNRALMGSNMQRQAVPLMVTQRSLVATGMEYKAATDSGVCVLAAHDGTVESVDADKIVVRLEDGSADTYELIKFMRSNQGTCVNQRPAVYVGDVVKKGDVLADGPATKDGEISLGKNALIGFMTWEGYNYEDAVLLNEKLVREDIYTSIHIEEYESEARDTKLGPEEVTRDIPNVGDDSLKDLDDRGIIRIGAEVKTGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGAYGIVVDVKVFTPENSDELQPGVRTCVRVYIAQKRKISVGDKMAGRHGNKGVVSRILPQEDMPFLPDGTPLDIVLNPLGVPSRMNIGQVLEVNLGYVAKALGWHVQTPVFDGAHESDIRDCLAEARDKWHGDHAPEYPTKLPRLMGDKGHIIDFSKIDLTDDGKTTVYDGRTGEKFPSKVTVGYMYYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGEDVPNPGIPESFRVMLKELQSLGLDIVVQDKEGNAVDMRQEYDDDDANFDNSDIGDNVLLESELQDDYSVKDADEGFDDDLGDEEPDEASLAQIEADNGDDLFDGE*