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L1_008_000M1_scaffold_1354

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1354_1
unknown

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2..124
DNA (123bp) protein (41aa)

This feature has no annotations

L1_008_000M1_scaffold_1354_2
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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187..996
DNA (810bp) protein (270aa)
PHP domain protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AJZ1_9CLOT
phosphotransferase domain-containing protein
Tax=BJP_IG2157_Clostridiales_52_13
L1_008_000M1_scaffold_1354_3
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1305..2327
DNA (1023bp) protein (341aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B7B5_9CLOT
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:CCX50119.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L1_008_000M1_scaffold_1354_4
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2396..3559)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DN79_CLOS4
Uncharacterized protein {ECO:0000313|EMBL:ERI98245.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
L1_008_000M1_scaffold_1354_5
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

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comp(3644..5221)
DNA (1578bp) protein (526aa)
asnB; asparagine synthetase B (EC:6.3.5.4)
Asparagine synthetase n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SKJ0_9FIRM
Asparagine synthetase {ECO:0000313|EMBL:CCZ45452.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
L1_008_000M1_scaffold_1354_6
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5583..6464)
DNA (882bp) protein (294aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
pseudouridine synthase (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AJL8_9CLOT
L1_008_000M1_scaffold_1354_7
unknown

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comp(6520..6753)
DNA (234bp) protein (78aa)

This feature has no annotations

L1_008_000M1_scaffold_1354_8
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6885..7127
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LTJ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS61843.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
XRE family transcriptional regulator
L1_008_000M1_scaffold_1354_9
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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comp(7662..9011)
DNA (1350bp) protein (450aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DP55_9FIRM
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:CDA90303.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
peptidase domain protein
L1_008_000M1_scaffold_1354_10
Ruminococcus gauvreauii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9931..10767)
DNA (837bp) protein (279aa)
Integrase-like protein n=1 Tax=Ruminococcus gauvreauii RepID=A8RJ13_9FIRM
Integrase-like protein {ECO:0000313|EMBL:ABS72060.1}; TaxID=438033 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus gauvreauii.;"
integrase family protein
L1_008_000M1_scaffold_1354_11
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10952..11212)
DNA (261bp) protein (87aa)
30S ribosomal protein S20 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B595_9CLOT
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
rpsT; 30S ribosomal protein S20
L1_008_000M1_scaffold_1354_12
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11380..12303
DNA (924bp) protein (308aa)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
spore protease (EC:3.4.24.78)
Germination protease n=1 Tax=Clostridium sp. CAG:226 RepID=R5B900_9CLOT
L1_008_000M1_scaffold_1354_13
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12347..13411
DNA (1065bp) protein (355aa)
Stage II sporulation protein P n=1 Tax=Clostridium sp. CAG:226 RepID=R5B618_9CLOT
Stage II sporulation protein P {ECO:0000313|EMBL:CCX50733.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
stage II sporulation protein P
L1_008_000M1_scaffold_1354_14
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13412..14548)
DNA (1137bp) protein (379aa)
Transcriptional regulator, CdaR n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U4F4_ETHHY
transcriptional regulator CdaR
Transcriptional regulator, CdaR {ECO:0000313|EMBL:ADU27761.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
L1_008_000M1_scaffold_1354_15
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14796..15671
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B851_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50439.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L1_008_000M1_scaffold_1354_16
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15723..16025)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HK30_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB26347.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
metal-binding protein
L1_008_000M1_scaffold_1354_17
unknown

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comp(16173..16316)
DNA (144bp) protein (48aa)

This feature has no annotations

L1_008_000M1_scaffold_1354_18
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16372..17370)
DNA (999bp) protein (333aa)
DNA polymerase III delta subunit n=1 Tax=Clostridium sp. CAG:226 RepID=R5B4J5_9CLOT
DNA polymerase III delta subunit {ECO:0000313|EMBL:CCX50213.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
DNA polymerase III, delta subunit
L1_008_000M1_scaffold_1354_19
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17408..18925)
DNA (1518bp) protein (506aa)
DNA internalization-related competence protein ComEC/Rec2 n=1 Tax=Clostridium sp. CAG:138 RepID=R6ATH2_9CLOT
DNA internalization-related competence protein ComEC/Rec2 {ECO:0000313|EMBL:CDA52089.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
DNA internalization-related competence protein ComEC/Rec2
L1_008_000M1_scaffold_1354_20
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18934..19332)
DNA (399bp) protein (133aa)
Putative endoribonuclease L-PSP n=1 Tax=Clostridium sp. CAG:226 RepID=R5BFI9_9CLOT
Putative endoribonuclease L-PSP {ECO:0000313|EMBL:CCX50211.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
endoribonuclease L-PSP
L1_008_000M1_scaffold_1354_21
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19395..19898)
DNA (504bp) protein (168aa)
ribosomal-protein-alanine acetyltransferase (EC:2.3.1.128)
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B3Q2_9CLOT
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:CCX50210.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L1_008_000M1_scaffold_1354_22
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19904..20572)
DNA (669bp) protein (223aa)
Universal bacterial protein YeaZ n=1 Tax=Clostridium sp. CAG:226 RepID=R5B7H8_9CLOT
Universal bacterial protein YeaZ {ECO:0000313|EMBL:CCX50209.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
peptidase M22 glycoprotease
L1_008_000M1_scaffold_1354_23
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20569..21036)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B4J1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50208.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L1_008_000M1_scaffold_1354_24
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21040..22158)
DNA (1119bp) protein (373aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
tgt; Queuine tRNA-ribosyltransferase (tRNA-guaninetransglycosylase) (Guanine insertion enzyme) (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Clostridium sp. CAG:226 RepID=R5BBI3_9CLOT
L1_008_000M1_scaffold_1354_25
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22174..23196)
DNA (1023bp) protein (341aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B7H4_9CLOT
L1_008_000M1_scaffold_1354_26
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23553..24368
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B4I7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50203.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
polysaccharide deacetylase
Displaying 26 items

View Taxonomy