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L1_008_000M1_scaffold_1543

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1543_1
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..217
DNA (216bp) protein (72aa)
NLP/P60 protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B8G4_9CLOT
Tax=BJP_IG2157_Clostridiales_52_13
L1_008_000M1_scaffold_1543_2
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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237..731
DNA (495bp) protein (165aa)
Toxin secretion/phage lysis holin n=1 Tax=Clostridium sp. CAG:226 RepID=R5B4R0_9CLOT
Toxin secretion/phage lysis holin {ECO:0000313|EMBL:CCX50515.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
putative 14.9 kDa protein in nagH 3'region
L1_008_000M1_scaffold_1543_3
unknown

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915..1247
DNA (333bp) protein (111aa)

This feature has no annotations

L1_008_000M1_scaffold_1543_4
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1380..1769)
DNA (390bp) protein (130aa)
NMT1/THI5 like domain protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B976_9CLOT
NMT1/THI5 like domain protein {ECO:0000313|EMBL:CCX50819.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein
L1_008_000M1_scaffold_1543_5
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1897..2433)
DNA (537bp) protein (179aa)
phosphatidylglycerophosphate synthase (EC:2.7.8.5)
CDP-alcohol phosphatidyltransferase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B8Z8_9CLOT
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:CCX50729.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L1_008_000M1_scaffold_1543_6
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2669..3853
DNA (1185bp) protein (395aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B590_9CLOT
PpiC-type peptidyl-prolyl cis-trans isomerase
L1_008_000M1_scaffold_1543_7
unknown

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3875..4177
DNA (303bp) protein (101aa)

This feature has no annotations

L1_008_000M1_scaffold_1543_8
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4262..5968)
DNA (1707bp) protein (569aa)
Oligoendopeptidase F n=1 Tax=Clostridium sp. CAG:226 RepID=R5B3T1_9CLOT
Oligoendopeptidase F {ECO:0000313|EMBL:CCX50235.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
oligoendopeptidase F
L1_008_000M1_scaffold_1543_9
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6125..7330
DNA (1206bp) protein (402aa)
Putative alanyl-tRNA synthetase domain-containing protein 1-B n=1 Tax=Clostridium sp. CAG:226 RepID=R5B7K2_9CLOT
Putative alanyl-tRNA synthetase domain-containing protein 1-B {ECO:0000313|EMBL:CCX50234.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
threonyl/alanyl tRNA synthetase SAD
L1_008_000M1_scaffold_1543_10
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7337..8641
DNA (1305bp) protein (435aa)
Gamma-D-glutamyl-L-diamino acid endopeptidase 1 domain protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D0G2_9CLOT
Gamma-D-glutamyl-L-diamino acid endopeptidase 1 domain protein {ECO:0000313|EMBL:EEG55189.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Zinc carboxypeptidase.
L1_008_000M1_scaffold_1543_11
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8766..9341
DNA (576bp) protein (192aa)
Translation initiation factor IF-3 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B7L1_9CLOT
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
translation initiation factor IF-3
L1_008_000M1_scaffold_1543_12
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9371..9568
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B3U0_9CLOT
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
50S ribosomal protein L35
L1_008_000M1_scaffold_1543_13
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9584..9940
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AM93_9CLOT
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
rplT; 50S ribosomal protein L20
L1_008_000M1_scaffold_1543_14
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10021..10782
DNA (762bp) protein (254aa)
RNA methyltransferase TrmH family group 3 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B6B8_9CLOT
RNA methyltransferase TrmH family group 3 {ECO:0000313|EMBL:CCX50838.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
rRNA methylase
L1_008_000M1_scaffold_1543_15
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10825..11319)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Clostridium tunisiense RepID=UPI0003046388
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EKQ52238.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
Hydrolase, NUDIX family
L1_008_000M1_scaffold_1543_16
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11322..12725)
DNA (1404bp) protein (468aa)
Maf-like protein BN545_01836 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B559_9CLOT
Maf-like protein BN545_01836 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
maf; nucleotide-binding protein implicated in inhibition of septum formation
L1_008_000M1_scaffold_1543_17
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12851..13885
DNA (1035bp) protein (345aa)
Cell shape determining protein MreB/Mrl family n=1 Tax=Clostridium sp. CAG:226 RepID=R5B3R4_9CLOT
Cell shape determining protein MreB/Mrl family {ECO:0000313|EMBL:CCX50220.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
MreB/Mrl family cell shape determining protein
L1_008_000M1_scaffold_1543_18
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14007..14858
DNA (852bp) protein (284aa)
Cell shape-determining protein MreC n=1 Tax=Clostridium sp. CAG:226 RepID=R5BFJ7_9CLOT
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
rod shape-determining protein MreC
L1_008_000M1_scaffold_1543_19
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14861..15370
DNA (510bp) protein (170aa)
Rod shape-determining protein MreD n=1 Tax=Clostridium sp. CAG:226 RepID=R5BBJ7_9CLOT
Rod shape-determining protein MreD {ECO:0000313|EMBL:CCX50222.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
rod shape-determining protein MreD
L1_008_000M1_scaffold_1543_20
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15401..18172
DNA (2772bp) protein (924aa)
penicillin-binding protein 2 (EC:2.4.1.129)
Penicillin-binding protein 2 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B4K4_9CLOT
Penicillin-binding protein 2 {ECO:0000313|EMBL:CCX50223.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L1_008_000M1_scaffold_1543_21
Faecalibacterium sp. CAG:1138, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18281..19486
DNA (1206bp) protein (402aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1262896 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:1138.;"
DNA polymerase IV n=1 Tax=Faecalibacterium sp. CAG:1138 RepID=R5FLW3_9FIRM
hypothetical protein
L1_008_000M1_scaffold_1543_22
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19567..20601
DNA (1035bp) protein (345aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Prolipoprotein diacylglyceryl transferase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B7J3_9CLOT
prolipoprotein diacylglyceryl transferase
L1_008_000M1_scaffold_1543_23
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20604..22067
DNA (1464bp) protein (488aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Nicotinate phosphoribosyltransferase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B3S0_9CLOT
putative nicotinate phosphoribosyltransferase
L1_008_000M1_scaffold_1543_24
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22045..22602
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BFK1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50226.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
autotransporter
L1_008_000M1_scaffold_1543_25
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22783..23220
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Lachnospiraceae bacterium NK4A136 RepID=UPI0003B60EC2
UBA/TS-N domain protein {ECO:0000313|EMBL:EDO58320.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
hypothetical protein
L1_008_000M1_scaffold_1543_26
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

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23352..24038
DNA (687bp) protein (229aa)
DNA-binding response regulator n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BG11_9FIRM
DNA-binding response regulator {ECO:0000313|EMBL:CDD64725.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
Two component transcriptional regulator, winged helix family
L1_008_000M1_scaffold_1543_27
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

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24702..25394
DNA (693bp) protein (231aa)
Histidine kinase n=1 Tax=Roseburia sp. CAG:100 RepID=R7R833_9FIRM
histidine kinase
Tax=BJP_IG2069_Clostridiales_48_15
L1_008_000M1_scaffold_1543_28
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25364..26332)
DNA (969bp) protein (323aa)
Sporulation domain-containing protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BAH3_9CLOT
Sporulation domain-containing protein {ECO:0000313|EMBL:CCX51279.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
sporulation domain-containing protein
L1_008_000M1_scaffold_1543_29
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26826..27545)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BE45_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX51122.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L1_008_000M1_scaffold_1543_30
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27592..28365)
DNA (774bp) protein (258aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B773_9CLOT
NGG1p interacting factor 3 protein, NIF3
Displaying items 1-30 of 35 in total

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