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L1_008_000M1_scaffold_1846

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1846_1
unknown

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210..377
DNA (168bp) protein (56aa)

This feature has no annotations

L1_008_000M1_scaffold_1846_2
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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551..1141
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VUD6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02328.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hydrolase, HD superfamily
L1_008_000M1_scaffold_1846_3
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1154..2011)
DNA (858bp) protein (286aa)
AAA ATPase n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LVZ9_CLOB8
ATPase AAA {ECO:0000313|EMBL:KEZ88050.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
ATPase AAA
L1_008_000M1_scaffold_1846_4
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2062..3423)
DNA (1362bp) protein (454aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B666_9CLOT
L1_008_000M1_scaffold_1846_5
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3486..4316)
DNA (831bp) protein (277aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B339_9CLOT
L1_008_000M1_scaffold_1846_6
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4414..5013
DNA (600bp) protein (200aa)
Stage II sporulation protein R n=1 Tax=Clostridium sp. CAG:226 RepID=R5BCF1_9CLOT
Stage II sporulation protein R {ECO:0000313|EMBL:CCX50497.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
stage II sporulation protein R
L1_008_000M1_scaffold_1846_7
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4983..5675
DNA (693bp) protein (231aa)
Spore cortex-lytic enzyme n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5F6_9CLOT
Spore cortex-lytic enzyme {ECO:0000313|EMBL:CCX50498.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
spore cortex-lytic protein
L1_008_000M1_scaffold_1846_8
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5690..7066
DNA (1377bp) protein (459aa)
Germination protein YpeB n=1 Tax=Clostridium sp. CAG:226 RepID=R5B8E2_9CLOT
Germination protein YpeB {ECO:0000313|EMBL:CCX50499.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
germination protein YpeB
L1_008_000M1_scaffold_1846_9
unknown

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7373..8029
DNA (657bp) protein (219aa)

This feature has no annotations

L1_008_000M1_scaffold_1846_10
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8041..8700
DNA (660bp) protein (220aa)
Zn-dependent hydrolase of the beta-lactamase fold protein n=1 Tax=Clostridium sp. CAG:138 RepID=R6AJQ5_9CLOT
Zn-dependent hydrolase of the beta-lactamase fold protein {ECO:0000313|EMBL:CDA51225.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
Zn-dependent hydrolase
L1_008_000M1_scaffold_1846_11
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8873..9181)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BD18_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50747.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L1_008_000M1_scaffold_1846_12
GWF2_Tenericutes_57_13_curated, Tenericutes, Bacteria

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comp(9343..10014)
DNA (672bp) protein (224aa)
Anaerobic ribonucleoside-triphosphate reductase activating protein id=4541557 bin=GWF2_Firmicute_57_13 species=Sphaerochaeta pleomorpha genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Firmicute_57_13 organism_group=Firmicute
pyruvate formate lyase-activating protein
Tax=GWF2_Tenericutes_57_13_curated
L1_008_000M1_scaffold_1846_13
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9996..12110)
DNA (2115bp) protein (705aa)
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:EMS73519.1}; EC=1.17.4.2 {ECO:0000313|EMBL:EMS73519.1};; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Clostridium termitidis CT1112 RepID=S0FWH1_9CLOT
anaerobic ribonucleoside-triphosphate reductase
L1_008_000M1_scaffold_1846_14
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12443..12676)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BA05_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX49697.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L1_008_000M1_scaffold_1846_15
unknown

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comp(12856..13371)
DNA (516bp) protein (172aa)

This feature has no annotations

L1_008_000M1_scaffold_1846_16
unknown

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comp(13719..13916)
DNA (198bp) protein (66aa)

This feature has no annotations

L1_008_000M1_scaffold_1846_17
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14092..14679)
DNA (588bp) protein (196aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KPJ4_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX43268.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L1_008_000M1_scaffold_1846_18
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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comp(14889..15983)
DNA (1095bp) protein (365aa)
Putative integrase-phage associated n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M673_9FIRM
Putative integrase-phage associated {ECO:0000313|EMBL:CDB95118.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
integrase family protein
L1_008_000M1_scaffold_1846_19
unknown

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comp(16095..16655)
DNA (561bp) protein (187aa)

This feature has no annotations

L1_008_000M1_scaffold_1846_20
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17076..17435)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9K5V7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS41820.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
transcriptional regulator
L1_008_000M1_scaffold_1846_21
unknown

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17601..17762
DNA (162bp) protein (54aa)

This feature has no annotations

L1_008_000M1_scaffold_1846_22
unknown

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17946..18134
DNA (189bp) protein (63aa)

This feature has no annotations

L1_008_000M1_scaffold_1846_23
unknown

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comp(18103..18309)
DNA (207bp) protein (69aa)

This feature has no annotations

L1_008_000M1_scaffold_1846_24
unknown

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18378..18611
DNA (234bp) protein (78aa)

This feature has no annotations

L1_008_000M1_scaffold_1846_25
unknown

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18608..18700
DNA (93bp) protein (31aa)

This feature has no annotations

Displaying 25 items

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