ggKbase home page

L1_008_000M1_scaffold_431_27

Organism: dasL1_008_000M1_concoct_47_fa

near complete RP 48 / 55 BSCG 50 / 51 MC: 1 ASCG 15 / 38
Location: 27543..28259

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MI01_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 78.3
  • Coverage: 230.0
  • Bit_score: 351
  • Evalue 4.10e-94
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.3
  • Coverage: 230.0
  • Bit_score: 351
  • Evalue 5.70e-94
RNA polymerase, sigma 29 subunit, SigE similarity KEGG
DB: KEGG
  • Identity: 79.3
  • Coverage: 217.0
  • Bit_score: 337
  • Evalue 2.30e-90

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Ruminococcus sp. CAG:624 → Ruminococcus → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 717
ATGAATTGGTGCAGAAGATTTTTATACAGGATTTACAGACTTATTTTCAAAAAGAGAAAATCAATTCGGGATGAAGTTTTTTATATTAACGGTTCCGATACTCTTCCTCCTCCGCTTACCAAGGAAGAGGAAGCGGAGGCCTTCAGTTTGCTTGAAAAAAAAAGTCCTAAAGCCAGAGAAACGTTGATTGTACATAATCTAAGGCTTGTCGTTTATATAGCAAAGAAATTCGAATCCTCAGGAGTAGGCGTAGAGGATCTTATCTCGATAGGAACAATAGGTCTTATAAAGGCTGTCAATACGTTCCGACCGGATAAAAATATAAAGCTTGCCACATATGCTTCAAGATGTATTGAAAACGAAATATTAATGTTTCTGAGGAAGTCCTCACAGCACAGAAATGAGATTTCTATCGACGAACCGCTTAATATCGACTGGGACGGCAATGAACTGCTGCTGTCCGATATTCTCGGCACCGACGAGGATATAGTGAACAAGGGTATTGAAACGGAGGCTGAAAGAGACATGCTCAGAGACGCAGTTGAAACCCTCGGCGGCCGTGAAAAGCAGATAATGCAAATGAGATTCGGTCTGATTGACGGGAAAGAAAAAACGCAGAAGGAAGTTGCAGACCTTATAGGAATTTCCCAGTCCTATATATCCAGACTGGAGAAAAAAATAATCAAAAGACTTAAGCTTGAATTGGAAAAGCTTTAA
PROTEIN sequence
Length: 239
MNWCRRFLYRIYRLIFKKRKSIRDEVFYINGSDTLPPPLTKEEEAEAFSLLEKKSPKARETLIVHNLRLVVYIAKKFESSGVGVEDLISIGTIGLIKAVNTFRPDKNIKLATYASRCIENEILMFLRKSSQHRNEISIDEPLNIDWDGNELLLSDILGTDEDIVNKGIETEAERDMLRDAVETLGGREKQIMQMRFGLIDGKEKTQKEVADLIGISQSYISRLEKKIIKRLKLELEKL*