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L2_026_000M1_scaffold_888

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_026_000M1_scaffold_888_1
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..234)
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZA05_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75446.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L2_026_000M1_scaffold_888_2
unknown

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comp(231..440)
DNA (210bp) protein (70aa)

This feature has no annotations

L2_026_000M1_scaffold_888_3
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

481..1095
DNA (615bp) protein (205aa)
SOS-response transcriptional repressor, LexA (EC:3.4.21.88)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
LexA repressor n=3 Tax=Eubacterium RepID=C4ZA04_EUBR3
L2_026_000M1_scaffold_888_4
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1208..1555)
DNA (348bp) protein (116aa)
Ribosomal silencing factor RsfS n=3 Tax=Eubacterium RepID=C4ZA03_EUBR3
iojap-related protein
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L2_026_000M1_scaffold_888_5
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1561..2142)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Eubacterium rectale CAG:36 RepID=R6U117_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC73826.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
conserved hypothetical protein TIGR00488
L2_026_000M1_scaffold_888_6
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2149..2775)
DNA (627bp) protein (209aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZA01_EUBR3
nicotinate (nicotinamide) nucleotide adenylyltransferase
L2_026_000M1_scaffold_888_7
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2779..3075)
DNA (297bp) protein (99aa)
Uncharacterized protein n=4 Tax=Eubacterium RepID=R6USW8_9FIRM
conserved hypothetical protein TIGR00253
Uncharacterized protein {ECO:0000313|EMBL:ACR75441.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L2_026_000M1_scaffold_888_8
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3090..4403)
DNA (1314bp) protein (438aa)
GTPase Obg n=3 Tax=Eubacterium RepID=C4Z9Z9_EUBR3
GTP1/OBG subdomain containing protein
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L2_026_000M1_scaffold_888_9
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4599..4886)
DNA (288bp) protein (96aa)
50S ribosomal protein L27 n=3 Tax=Eubacterium RepID=RL27_EUBR3
rpmA; 50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L2_026_000M1_scaffold_888_10
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4890..5219)
DNA (330bp) protein (110aa)
Predicted ribosomal protein n=3 Tax=Eubacterium RepID=D6E4N8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC73813.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L2_026_000M1_scaffold_888_11
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5219..5527)
DNA (309bp) protein (103aa)
50S ribosomal protein L21 n=4 Tax=Eubacterium RepID=RL21_EUBR3
LSU ribosomal protein L21P
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L2_026_000M1_scaffold_888_12
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5631..6839)
DNA (1209bp) protein (403aa)
Ribonucleases G and E (EC:3.1.26.-)
Ribonucleases G and E {ECO:0000313|EMBL:CBK90376.1}; EC=3.1.26.- {ECO:0000313|EMBL:CBK90376.1};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Ribonucleases G and E n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E4N6_9FIRM
L2_026_000M1_scaffold_888_13
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6839..7558)
DNA (720bp) protein (240aa)
Fe-S oxidoreductase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z9Z4_EUBR3
Fe-S oxidoreductase
Fe-S oxidoreductase {ECO:0000313|EMBL:ACR75435.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L2_026_000M1_scaffold_888_14
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7548..9410)
DNA (1863bp) protein (621aa)
Fe-S oxidoreductase n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TNN0_9FIRM
Fe-S oxidoreductase {ECO:0000313|EMBL:CDC73805.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Fe-S oxidoreductase
L2_026_000M1_scaffold_888_15
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9445..10728)
DNA (1284bp) protein (428aa)
Imidazole glycerol phosphate synthase subunit HisF putative n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TVE8_9FIRM
Histidine biosynthesis bifunctional protein HisIE {ECO:0000256|HAMAP-Rule:MF_01019}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
imidazole glycerol phosphate synthase subunit HisF, putative
L2_026_000M1_scaffold_888_16
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10730..11200)
DNA (471bp) protein (157aa)
Imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|SAAS:SAAS00218099}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|SAAS:SAAS00263879};; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Imidazoleglycerol-phosphate dehydratase n=3 Tax=Eubacterium RepID=C4Z9Z1_EUBR3
L2_026_000M1_scaffold_888_17
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11257..12450)
DNA (1194bp) protein (398aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Histidinol dehydrogenase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z9Z0_EUBR3
histidinol dehydrogenase
L2_026_000M1_scaffold_888_18
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12493..13140)
DNA (648bp) protein (216aa)
ATP phosphoribosyltransferase catalytic subunit (EC:2.4.2.17)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00008790}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_01018};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_01018};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00046302};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
ATP phosphoribosyltransferase n=4 Tax=Eubacterium RepID=C4Z9Y9_EUBR3
L2_026_000M1_scaffold_888_19
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13144..14391)
DNA (1248bp) protein (416aa)
ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z9Y8_EUBR3
histidine--tRNA ligase
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L2_026_000M1_scaffold_888_20
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14407..14940)
DNA (534bp) protein (178aa)
Holliday junction resolvase RecU {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056687}; EC=3.1.22.- {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056689};; Recombination protein U homolog {ECO:0000256|HAMAP-Rule:MF_00130}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Holliday junction resolvase RecU n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z9Y7_EUBR3
Holliday junction-specific endonuclease
L2_026_000M1_scaffold_888_21
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15000..15974)
DNA (975bp) protein (325aa)
Pseudouridylate synthases, 23S RNA-specific (EC:5.4.99.12)
Pseudouridine synthase n=1 Tax=Eubacterium rectale CAG:36 RepID=R6UST9_9FIRM
Pseudouridine synthase {ECO:0000313|EMBL:CDC73797.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L2_026_000M1_scaffold_888_22
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16016..18016)
DNA (2001bp) protein (667aa)
UPF0313 protein BN626_01324 n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TNM2_9FIRM
UPF0313 protein BN626_01324 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Fe-S oxidoreductase
L2_026_000M1_scaffold_888_23
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18043..18795)
DNA (753bp) protein (251aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Pseudouridine synthase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z9Y4_EUBR3
16S pseudouridylate synthase
L2_026_000M1_scaffold_888_24
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18796..19710
DNA (915bp) protein (305aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z9Y3_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75424.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L2_026_000M1_scaffold_888_25
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19690..20352)
DNA (663bp) protein (221aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z9Y2_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75423.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L2_026_000M1_scaffold_888_26
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20366..20851)
DNA (486bp) protein (162aa)
pantetheine-phosphate adenylyltransferase, bacterial (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Phosphopantetheine adenylyltransferase n=4 Tax=Eubacterium RepID=COAD_EUBR3
L2_026_000M1_scaffold_888_27
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20862..21413)
DNA (552bp) protein (184aa)
Site-specific DNA-methyltransferase (Adenine-specific) n=3 Tax=Eubacterium rectale RepID=C4Z9Y0_EUBR3
RNA methyltransferase, RsmD family
RNA methyltransferase, RsmD family {ECO:0000313|EMBL:CBK94490.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L2_026_000M1_scaffold_888_28
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21434..21982)
DNA (549bp) protein (183aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:CBK94491.1}; EC=2.7.8.5 {ECO:0000313|EMBL:CBK94491.1};; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Phosphatidylglycerophosphate synthase n=4 Tax=Eubacterium RepID=C4Z9X9_EUBR3
L2_026_000M1_scaffold_888_29
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21979..23304)
DNA (1326bp) protein (442aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Ribosomal protein S12 methylthiotransferase RimO n=3 Tax=Eubacterium RepID=C4Z9X8_EUBR3
MiaB-like tRNA modifying enzyme YliG
L2_026_000M1_scaffold_888_30
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23370..23630)
DNA (261bp) protein (87aa)
DNA-directed RNA polymerase, omega subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
DNA-directed RNA polymerase subunit omega n=3 Tax=Eubacterium RepID=D4JLJ6_9FIRM
Displaying items 1-30 of 43 in total

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